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The participants' data will go in their own dropbox folder.
Each of the participants' data needs to follow the same directory structure as all other `eqa_*` folders:
- `data/reads` --> with FASTQ…
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Hello, I'm getting a segfault when building the latest version: 817ba03fc19e0fb2076381eb9536ff99240bd468
Using this graphmap command line:
graphmap align --threads 1 --ref Chlamy_and_lambda.fa --…
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# Issue Report
## Please describe the issue:
I am trying to run dorado on a .pod5 file. However, when I do so, I get an error:
[2024-04-19 23:00:41.196] [error] finalise() not called on a Hts…
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Hi
I have a query related to how tools are run in the nanocompore pipeline. Since your protocol is latest, I still wish to confirm if I need to make some changes according to what has been describ…
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Think about the following questions and prepare brief answers for a presentation and discussion.
- Identify state transitions in CG at large where a message could be used.
- What could the…
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Hi,
I am using Aldy v4.5 (Python 3.7.1 on Linux) to genotype Oxford Nanopore WGS data in phased BAM files. First I created a profile using one of my long read bam files without any CNVs or SVs in m…
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I got heaps of IndexError while running clairs_to with the latest docker image on Singularity:
```
Traceback (most recent call last):
File "/opt/bin/clairs_to.py", line 107, in
main()
Fi…
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Dear all,
We have been going through the SAM specification with a fine comb, and
found a few issues.
The main issue is that there seems to be a confusion about ‘read’ and
‘segment’ at various plac…
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### Checklist
- [X] I added a descriptive title
- [X] I searched open reports and couldn't find a duplicate
### What happened?
Dear conda devs,
It's my first time trying to contribute to conda f…
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In the validation of anvil5, populated dataset descriptions are not being displayed. [This document](https://docs.google.com/document/d/17JtCSY6BTbU_dltA0mF06XMdFcpN_1oG5D9sjoQuqjQ/edit) contains two…