-
see https://github.com/microbiomedata/submission-schema/issues/102#issuecomment-1549608623
-
**Is your feature request related to a problem? Please describe.**
We would like to restrict the Metagenomics pipeline so that all options have been removed. Each project will run all of the workflow…
-
moved reaction-oriented elements from `src/schema/annotation.yaml` to `src/schema/deprecated.yaml`
-
Programmatic access to NMDC data for broad community use
Web APIs enable programmatic access to data and computation in a scalable, automated fashion. This
allows users to orchestrate data access into…
-
Whose responsible for fixing this kind of thing?
How did it make it past nmdc-runtime validation?
-
There are legacy sequencing data files from studies that have been removed or re-ided but not cleaned up properly (bioscales)
After all studies have been re-id we should use this function to delete a…
aclum updated
3 months ago
-
Description of the Problem:
When running `extract-records` against legacy study datasets, we are finding missing DataObjects as defined by:
- DataObject.id present in one or more has_input/has_outpu…
-
The [developer documentation](https://github.com/microbiomedata/nmdc-schema/blob/main/DEVELOPMENT.md) says that spinning up the Docker Compose stack will result in a Mkdocs dev-server listening for in…
-
Reviewing classes
Reaction vs ReactionActivity vs ReactionParticipant
-
nmdc-runtime (and thus JSON validation for metadata ingest) is currently [pinned to v3.2.0](https://github.com/microbiomedata/nmdc-runtime/blob/5dbf733778cc38cfb1878e191d437bb9894486b7/requirements/ma…