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### Current behavior:
There are two separate pathways for the β-oxidation of linoleoyl and γ-linolenoyl-CoA to 4-decenoyl-CoA:
Overall Reaction | “Low-Resolution” Version | “High-Resolution” Ver…
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Currently, our new jekyll sites encode a list of `keywords` representing gene products, chemicals, diseases and pathway names found in a given pathway. Schemas now supports Gene, Protein, and other B…
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Hi
I am getting this error when I am running the following :
woltka classify \
--input indir \
--coords coords.txt \
--map gene-to-protein.map \
--map protein-to-enzrxn.map \
…
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Hi Gaddlord,
I hope it's not too complicated but would it be possible to add MTG Arena decks' format to the list of supported ones ? I mean the format like the following deck, exported from MTG Are…
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I have a list of GO annotations created with [FANTASIA](https://github.com/MetazoaPhylogenomicsLab/FANTASIA). Therefore, I do not have protein ID values for many genes. However, this software seems po…
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I am watching [this talk](https://www.youtube.com/watch?v=dNnHlb4RfJY) from EuroPython 2023. I believe that use cases shown there could be adapted to SquidPy. For example, make interactive scatter plo…
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Hi,
I'm wondering if there is an easy way to modify the nitrogen pathway to replace or add the amoA gene from the uncultured archaeon by the same gene from the type strain nitrosopumilus maritimus th…
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After sme investigation of slowness from CLEO This guide
[Guided pathways to divorce forms (v47b_DA - 6 July 2021).zip](https://github.com/CCALI/a2jviewer/files/6842351/Guided.pathways.to.divorce.fo…
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Hi,
Thank you for this great package, I am really enjoying using it.
I have a question:
In my dataset (labelled prior), when focusing on one signaling pathway of interest, I observe a relati…
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Hello there,
I noticed that the `download_KEGGfile` function is currently not working.
When I am trying to run `download_KEGGfile(pathway_id="00010", species="eco", target_dir = getwd())`, only th…