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If the input pheno.tsv file has missing values / empty strings / nan in one of the participant_id columns, things break in unexpected and unhandled ways.
Something like this:
| participant_id | other…
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I have performed an integrated analysis of several samples, three of which are cancer cell lines grown in different growth conditions (as a conventional monolayer; tumour spheroid; in co-culture with …
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**Submitting author:** @jeancmaia (Jean Carlos Maia)
**Repository:** https://github.com/jeancmaia/mcglm
**Branch with paper.md** (empty if default branch): main
**Version:** 0.2.1
**Editor:** @AJQuin…
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Dear all,
As I understand it, according "Why ORPHAcoding" presentation, the orpha ORPHA:616874 (Rare disorder without a determined diagnosis after full investigation) should be used in conjunction …
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noticed this conflation while working on RTXteam/RTX-KG2#210:
https://arax.ncats.io/?term=DOID:9352
in particular, these nodes from the above page don't seem like they belong in the type 2 diabe…
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When this issue was opened, 151 active ontologies in the OBO Foundry did not have a `publications:` entry in their metadata. This field is used to generate the citation information on the ontology pag…
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I'm updating the OMIM ingest to remove nodes and make it edge-only. The gene nodes that it was previously making should all be taken care of SSSOM mapping to HGNC nodes, but we need to make sure that …
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## Template Fixes:
- Removed unwanted spaces trialing ontology IDs of the `host (food production name)` field terms: "**Nursing pig [FOODON:00004297 ]**" and "**Tom (Gobbler) [FOODON:00004304 ]**".
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It is currently not possible to distinguish between morphological and functional/circuit phenotypes in phenotypic class statements. Being able to do so would be useful to VFB (this was originally dis…