monarch-initiative monarch-ingest issues

monarch-initiative / monarch-ingest

Data ingest application for Monarch Initiative knowledge graph using Koza

https://monarchinitiative.org

15 stars 2 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Load all mappings from monarch-mapping-commons into Solr

#610 kevinschaper opened 4 days ago
0
Add species context qualifier, update closurizer

#609 kevinschaper closed 4 days ago
0
Add maxo ingest edges to ingests.yaml

#608 kevinschaper closed 1 week ago
0
update to move go annotations to modularized version

#607 AO33 closed 1 week ago
0
Remove non modular hpoa

#606 kevinschaper closed 1 month ago
0
Bring in modular hpoa

#605 kevinschaper closed 1 month ago
0
Bring ncbi gene nodes in from modular ingest

#604 kevinschaper closed 1 month ago
0
Populate publications for GO annotation ingest, plus update tests & doc to match

#603 kevinschaper closed 1 month ago
0
Add missing function call

#602 ptgolden closed 1 month ago
0
Updates phenio.db association population to gene & disease phenotype associations

#601 kevinschaper closed 1 month ago
0
Delete incomplete cached file during ingest download?

#600 ptgolden closed 2 months ago
1
Populate type for HGNC & Alliance gene nodes

#599 kevinschaper closed 2 months ago
1
Removed taxon-labels map requirement from hgnc gene ingest.

#598 DnlRKorn closed 3 months ago
2
Ingest for HGNC Gene unnecessarily needs taxon-label map

#597 DnlRKorn closed 3 months ago
0
Monarch KG neo4j dump not working 2023 10 17

#596 kcortes133 opened 3 months ago
0
Repair zeroes in phenotype.hpoa, update PKS

#595 kevinschaper closed 3 months ago
0
Create delta between ORION and MONDO

#594 DnlRKorn opened 4 months ago
1
Get output from modular ingests before merge in Jenkins job

#593 glass-ships closed 1 month ago
1
Mondo derived g2d's should not be presented on the website as "associations"

#592 matentzn opened 5 months ago
0
Use duckdb for jsonl conversion to fit into memory

#591 kevinschaper closed 4 months ago
0
Add modular genotype & variant ingests

#590 kevinschaper closed 5 months ago
1
linkml solr upgrade

#589 kevinschaper closed 5 months ago
0
Create exploded association exports that traverses closures

#588 kevinschaper closed 5 months ago
1
Update Koza, imports, and tests. Fix lint/format make targets

#587 glass-ships closed 6 months ago
0
notebook experimenting on using duckdb to merge a kg

#586 kevinschaper opened 7 months ago
0
Create cookiecutter template for modular koza ingests

#585 glass-ships closed 6 months ago
0
Add knowledge level & agent type, plus constraint improvements

#584 kevinschaper closed 7 months ago
0
cat-merge update

#583 kevinschaper closed 7 months ago
0
Use systematic id for empty gene names

#582 glass-ships closed 7 months ago
0
add step to upload index.html generated by multi-indexer

#581 glass-ships closed 8 months ago
1
Fix upload and index to KGHub

#580 glass-ships closed 8 months ago
11
Use sudo when downloading solr.tar.gz onto the solr dev instance

#579 kevinschaper closed 8 months ago
0
Restore onset_qualifier, plus HPOA DB_reference -> publication and doc cleanup

#578 kevinschaper closed 8 months ago
0
Treats refactor / Biolink 4.1.x update

#577 kevinschaper closed 8 months ago
0
Add object taxon info for gene to gene association export

#576 kevinschaper closed 8 months ago
0
Biolink 4.1.x upgrade / treats refactor

#575 kevinschaper closed 8 months ago
0
Fix release script not running in jenkins job

#574 glass-ships closed 8 months ago
0
Upload data to archive bucket on release

#573 glass-ships closed 8 months ago
0
fix write-metadata params in Jenkinsfiles

#572 kevinschaper closed 8 months ago
0
Updates to latest biolink, adds frequency quantifier fields to hpoa d2p

#571 kevinschaper closed 8 months ago
0
Upload/Update dev solr service

#570 glass-ships closed 9 months ago
0
Upload/update Solr in Jenkins pipeline

#569 glass-ships closed 9 months ago
0
Update closurizer to 0.5.1

#568 kevinschaper closed 9 months ago
0
Add denormalized node output file produced by closurizer with has_phenotype expansions and load it into Solr

#567 kevinschaper closed 9 months ago
0
Add script to create github release via jenkins job

#566 glass-ships closed 9 months ago
0
Adds copy-field declarations for the full_name field which stores the long name of genes

#565 kevinschaper closed 9 months ago
0
Adds lowercase keyword grounding field to Solr entity collection

#564 kevinschaper closed 9 months ago
0
Include human gene expression from bGee

#563 kevinschaper closed 10 months ago
1
Download mappings from data.mi.org

#562 glass-ships closed 10 months ago
0
Write data and package versions to data/output

#561 glass-ships closed 8 months ago
5