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Hi,
This is another feature that would be really useful. Plotting perhaps using plotly backend, so big trees can be viewed and zoom-ed in/out. I see there is show() function, but it does not show top…
mashu updated
5 years ago
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**Submitting author:** @wrightaprilm (April Wright)
**Repository:** https://github.com/wrightaprilm/treesiftr
**Version:** v1.0.0
**Editor:** @juanklopper
**Reviewers:** @ethanwhite, @rachelss
**Aut…
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* [x] ERQ 1
* [x] ERQ 2
* [x] ERQ 3
* [x] ERQ 4
* [x] ERQ 5
The problems with the PNGs appear fixed.
To reproduce:
```
cd pirouette_article/scripts
./run
```
wait for some time…
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Hey,
We're Trying to import a tree using treeAnc. We've encountered several issues:
1. The module was unable to parse a tree formatted as nwk, generated by python's ete3.NCBITaxa.get_topology . Th…
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Hi Joey,
This is my first time using R so I have lots of questions on how to generate heatmaps. After following your extensive tutorial I managed to plot a heatmap using my own data (see attached), g…
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### Summary
- What does this package do? (explain in 50 words or less):
This package helps users to build a reasonable starting phylogeny for phylogenetic analysis.
In particular, this package…
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Files:
```bash
/nfs4/my-gridfront/mykopat-proj3/mykopat-metatrans/Flo3/job/reference_transcripts/ref_AA9_dikarya_all.fasta
/nfs4/my-gridfront/mykopat-proj3/mykopat-metatrans/Flo3/job/reference_…
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steps to reproduce
Tools > phylogenetic diversity
The table in section "step 2. select phylogenetic trees" is empty.
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`clmp` function sometimes outputs results with a 100-tip tree, and other times seems to enter an infinite loop.
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I primarily run computational jobs locally on my macbook. It has a powerful enough processor to run most jobs, but I've occasionally run myself into week long processing jobs (distancing sequencing re…