richelbilderbeek pirouette_article issues

richelbilderbeek / pirouette_article

Article about pirouette, by Bilderbeek, Laudanno and Etienne

GNU General Public License v3.0

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Submit pirouette to CRAN

#127 richelbilderbeek opened 3 years ago
0
Submit mcbette to CRAN

#126 richelbilderbeek closed 3 years ago
1
Process last feedback

#125 richelbilderbeek closed 3 years ago
1
Get DOI for pirouette, pirouette_article and pirouette_examples

#124 richelbilderbeek closed 3 years ago
0
Fix pirouette

#123 richelbilderbeek closed 3 years ago
1
Remove 'new' tags

#122 richelbilderbeek closed 3 years ago
1
Upload revised manuscript on biorxiv

#121 richelbilderbeek closed 3 years ago
2
Upload data for article

#120 richelbilderbeek closed 3 years ago
1
Feedback 2020-07-31

#119 richelbilderbeek closed 3 years ago
1
Get lambda and mu estimates of twin tree

#118 richelbilderbeek closed 3 years ago
3
Feedback 2020-06-30

#117 richelbilderbeek closed 3 years ago
1
Process: examples create a distribution of trees of different sizes

#116 richelbilderbeek closed 3 years ago
0
Re-check reproducibility on same computer and day

#115 richelbilderbeek closed 3 years ago
2
Fix labels

#114 richelbilderbeek closed 3 years ago
3
Process feedback

#113 richelbilderbeek closed 3 years ago
1
Write script to fix tree

#112 richelbilderbeek closed 3 years ago
1
Feedback

#111 richelbilderbeek closed 3 years ago
0
Remove duplicate figure 5 and 6

#110 richelbilderbeek closed 3 years ago
2
Redo pirouette_example_41

#109 richelbilderbeek closed 3 years ago
1
Re-create figure 16, 17 and 18

#108 richelbilderbeek closed 3 years ago
4
Fix nomenclature problem

#107 richelbilderbeek closed 3 years ago
2
Re-create figure 3

#106 richelbilderbeek closed 3 years ago
4
Second resubmission

#105 richelbilderbeek closed 3 years ago
12
Changes @Giappo

#104 richelbilderbeek closed 3 years ago
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Update all pirouette example figure

#103 richelbilderbeek closed 4 years ago
1
Process point Giovanni

#102 richelbilderbeek closed 4 years ago
2
Process feedback response letter Rampal

#101 richelbilderbeek closed 3 years ago
3
Words "importance" and "error"

#100 Giappo closed 3 years ago
1
FYI: Richel read this!

#99 Giappo closed 4 years ago
2
sections 8.7 through 8.14 of the Supplementary materials need a description

#98 Giappo closed 3 years ago
6
Process feedback article before June 29th

#97 richelbilderbeek closed 3 years ago
3
Update

#96 richelbilderbeek closed 4 years ago
0
[SCRIPTING] 27: non-standard clock model (17 with replicates)

#95 richelbilderbeek closed 4 years ago
1
[RUNNING] 19: effect of halving DNA sequence length

#94 richelbilderbeek closed 4 years ago
1
29: Check 'The effect of MCMC chain length'

#93 richelbilderbeek closed 4 years ago
1
Fix bug in `pir_to_pics`

#92 richelbilderbeek closed 4 years ago
6
Cannot create evidence file in subsubsub folder

#91 richelbilderbeek closed 4 years ago
2
Updates from Overleaf

#90 richelbilderbeek closed 4 years ago
0
[RUNNING] 28: Run a distribution of DD trees with same DD settings as exemplary one

#89 richelbilderbeek closed 4 years ago
8
Make video how to run a pirouette example on Peregrine

#88 richelbilderbeek closed 4 years ago
2
[RUNNING] 17: Interpret and improve subsection 'The effect of non-clock like models'

#87 richelbilderbeek closed 4 years ago
3
Correct capitalization of references

#86 richelbilderbeek closed 4 years ago
0
More gently introduce the set of inference models we use

#85 richelbilderbeek closed 4 years ago
1
Call a site model a site model

#84 richelbilderbeek closed 4 years ago
0
Sort values in Table 1 alphabetically

#83 richelbilderbeek closed 4 years ago
6
Add reference to TESS package

#82 richelbilderbeek closed 4 years ago
6
Add reference to DDD package

#81 richelbilderbeek closed 4 years ago
5
Describe nLTT statistic in main text

#80 richelbilderbeek closed 4 years ago
0
Describe DD in main text

#79 richelbilderbeek closed 4 years ago
0
Use nice DD tree in main text's example code

#78 richelbilderbeek closed 4 years ago
4