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richelbilderbeek
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pirouette_article
Article about pirouette, by Bilderbeek, Laudanno and Etienne
GNU General Public License v3.0
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Add literature to section 'Does error scale with tree size?' in Appendix
#77
richelbilderbeek
closed
4 years ago
1
Plot tree in article nicely
#76
richelbilderbeek
closed
4 years ago
13
Pick one tree for our main example
#75
richelbilderbeek
closed
4 years ago
18
Shorten to application
#74
richelbilderbeek
closed
4 years ago
1
Add empiricists guidelines in the appendix
#73
richelbilderbeek
closed
4 years ago
1
Shorten main text to one example
#72
richelbilderbeek
closed
4 years ago
1
Updates from Overleaf
#71
richelbilderbeek
closed
4 years ago
0
Interpret and improve subsection 'The effect of mutation rate'
#70
richelbilderbeek
closed
4 years ago
2
Interpret and improve subsection 'The effect of equal or equalized mutation rate in the twin' alignment'
#69
richelbilderbeek
closed
4 years ago
2
Interpret and improve subsection 'The effect of differently common diversity-dependent trees'
#68
richelbilderbeek
closed
4 years ago
33
Interpret and improve subsection 'The effect of assuming a Yule tree prior on a BD tree'
#67
richelbilderbeek
closed
4 years ago
2
Interpret and improve subsection 'The effect of assuming a Yule tree prior on a Yule tree'
#66
richelbilderbeek
closed
4 years ago
2
Interpret and improve subsection 'The effect of non-clock like models'
#65
richelbilderbeek
closed
4 years ago
2
[RUNNING] 21: Interpret and improve subsection 'The effect of DNA sequence length'
#64
richelbilderbeek
closed
4 years ago
2
[RUNNING] 20: Interpret and improve subsection 'The effect of the number of taxa'
#63
richelbilderbeek
closed
4 years ago
3
pirouette: add pir_plots
#62
richelbilderbeek
closed
4 years ago
1
Explore RPANDA::JSDtree
#61
richelbilderbeek
closed
4 years ago
8
pirouette: add `pir_runs`
#60
richelbilderbeek
closed
4 years ago
3
Experiment: different mutation rates
#59
richelbilderbeek
closed
4 years ago
4
Experiment: DD with BD
#58
richelbilderbeek
closed
4 years ago
6
Experiment: Yule on Yule
#57
richelbilderbeek
closed
4 years ago
3
Experiment: alignment size
#56
richelbilderbeek
closed
4 years ago
7
Experiment: effect of number of taxa
#55
richelbilderbeek
closed
4 years ago
3
Write response letter
#54
richelbilderbeek
closed
4 years ago
3
Indeed an Application?
#53
richelbilderbeek
closed
4 years ago
2
Process feedback reviewers
#52
richelbilderbeek
closed
4 years ago
2
Publication on MEE: complete checklist
#51
Giappo
closed
4 years ago
11
Count words properly
#50
richelbilderbeek
closed
5 years ago
1
Pick different RNG seed
#49
richelbilderbeek
closed
5 years ago
1
Separate final plot
#48
richelbilderbeek
closed
5 years ago
3
Fix RQE 2 code
#47
richelbilderbeek
closed
5 years ago
3
Process feedback Rampal #2
#46
richelbilderbeek
closed
5 years ago
5
Measure effect of alignment on twinning
#45
richelbilderbeek
closed
4 years ago
2
pirouette fails too often, due to mcbette
#44
richelbilderbeek
closed
5 years ago
8
Cite newer BEAST2 article?
#43
richelbilderbeek
closed
4 years ago
1
Implement feedback Rampal #1
#42
richelbilderbeek
closed
5 years ago
2
Run example_3 in parallel
#41
richelbilderbeek
closed
5 years ago
23
Fix create_test_pir_out
#40
richelbilderbeek
closed
5 years ago
1
Plot to 95% quantile
#39
richelbilderbeek
closed
5 years ago
1
Better pir_plot
#38
richelbilderbeek
closed
5 years ago
3
Better plotting on Peregrine
#37
richelbilderbeek
closed
5 years ago
1
pir_plot: show models names' abbreviations
#36
richelbilderbeek
closed
5 years ago
1
Review description
#35
richelbilderbeek
closed
5 years ago
0
Review introduction
#34
richelbilderbeek
closed
5 years ago
1
Review abstract
#33
richelbilderbeek
closed
5 years ago
1
pirouette_article: review discussion
#24
richelbilderbeek
closed
5 years ago
2
pirouette_article: review ERQ 5
#28
richelbilderbeek
closed
5 years ago
3
pirouette_article: review ERQ 4
#23
richelbilderbeek
closed
5 years ago
1
pirouette_article: review ERQ 3
#27
richelbilderbeek
closed
5 years ago
2
pirouette_article: review ERQ 2
#22
richelbilderbeek
closed
5 years ago
2
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