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Hello,
I just wanted to say I appreciate the port of Prodigal, it's great work!
There is a case where running [GCA_900004415.1](https://www.ncbi.nlm.nih.gov/data-hub/genome/GCA_900004415.1/) giv…
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Hi!
Thanks for the great tool! I was wondering whether you are planning to update the current version of prodigal used by PhaTYP to prodigal-gv to improve gene calling for viruses with alternative …
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Hello!
First of all, thanks for building and maintaining this tool! It is very well documented and easy to use!
I have one question/concern about the output. For my work, I need to validate eac…
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Dear doctor song @ songweizhi:
I am running MetaCHIP for this command:
MetaCHIP BP -p AN20.MetaCHIP -r g -t 100
My MetaCHIP version is 1.10.9 and my biopython version is 1.79.
But i still met th…
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Dear team,
I have tried to do an allele call using a large number of genomes (>3000) and I ran into an issue.
`chewie AlleleCall -i Genomes/ -g senterica_INNUENDO_cgMLST/ -o Results --cpu 30 --pt…
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Hello,
Thanks for developing this great tool!
I have been running pyrodigal and prodigal in parallel against multiple NCBI genomes and I have some questions about the results.
if we take the …
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HI,
I get the following error when running PhaTYP:
```
Opening the database file... No such file or directory
[0.004s]
Error: Error calling stat on file database/database.fa
Running prodiga…
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Dear ChewBBACA Team,
Thank you for providing chewBBACA!
I am trying to run cgMLST with version 3.1.0 on 85 Clostridium perfringens genomes. I downloaded the scheme from ridom cgMLST server.
http…
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Hey Nick,
When running ORForise on Prodigal, or GeneMarkS, we get N/A as "Median_Stop_Difference_of_Matched_ORFs";
```
Percentage_of_Genes_Detected,Percentage_of_ORFs_that_Detected_a_Gene,P…
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Hi Josh,
Whilst running the VEBA-binning-prokaryotic module, I get this error at step 7_dastool - /bin/sh: 1: Syntax error: redirection unexpected.
Not sure if this is an issue with my set up o…