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Hi,
I use compass with mosaic from proteogenomic data. I would like to reuse the compass data (small sub-clones) with the phenotypic data to analyze the protein expression of the sub-clones. Is this …
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Dear TIES developers,
I would like to setup some FEP simulations for a protein-peptide system where I mutate a residue of the peptide. This seems similar to TIES-PM (https://doi.org/10.1021/acs.jct…
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So, we have some urinalysis labs that have both categorical & continuous data in the form. Specifically:
#### Continuous
- Urobilinogen, pH, Specific Gravity
#### Categorical
- Appearance, Col…
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Hi, thanks for creating this tool. But recently when I use pepquery2 in web application and stand alone version, there was error about the mgf file in s3 bucket is not exist. I attached the screenshot…
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Hi,
I wonder what configuration and object looked like for these objects? https://cells.ucsc.edu/?ds=multimodal-pbmc+sct
We have a gene expression + CITE-seq data for several objects, and we'd lik…
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Hi, I found in the closed issues a notebook to run simulation with two ligands. However, my protein also has a Mn ion. Is it currently possible to run this type of simulation? If so, I should keep the…
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# 15 Open source & Free Web-based 3D Molecular & Protein Modelling software
[https://medevel.com/15-3d-molecular-protein-modelling/](https://medevel.com/15-3d-molecular-protein-modelling/)
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@Chris-Evelo @egonw ;
Since several hormones/polypeptides are in the border region of being called a metabolite or a protein, we could think about including protein IDs for these types of compounds…
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Dear DIA-NN Team,
Once again, a tremendous amount of work has gone into building and improving DIA-NN.
We recently started using a new Windows machine for DIA-NN processing, relatively powerful with…
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Hello,
I was trying to train the models, and I get this error:
```
Traceback (most recent call last):
File "/app/models/train.py", line 4, in
from dataloader import (ApodDataModule, Caid…