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If a glycan details page or protein details page is called with a valid GlyTouCan ID or UniProtKB Accession that is not in GlyGen – The message will no longer say “ID not in GlyGen” but rather confirm…
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Hi @ramou @simaataei
I was able to run Toot-BertT easily given its straightforward installation but how can I run ToT-Bert_ICAT? Are you still writing executables like `run.py` or something that w…
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As DNA extraction is such a central point in contemporary plant research, I would like to draw attention to an issue that has been bugging me for some time. Not sure here is the right place to mention…
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Hi,
Thank you for your tool. We would like to ask where the data for protein DmkA was obtained from. We didn't find the protein sequence of DmkA in NR database. And the proteins annotated as DmkA u…
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Hi ChEBI,
I'm going back to a GO SourceForge item requesting standardization between lipoprotein terms in GO, and I'd like to get your advice.
1/ If 'lipoprotein ; CHEBI:6495' is the same as 'lipopr…
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### Version
4.2.13
### Severity
Low
### Steps to Reproduce
If you don't specify -Columns, no columns are included in export (you get a blank line per row, though)
### Expected behavior
```conso…
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Hi, @apcamargo
Hello, the results I ran here only have protein sequences and no cds sequences. Can this software get the corresponding cds sequence codes?
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Dear @bcov77 and @srwarner,
I have gone through the Nat Comm pipeline and got quite promising results for miniprotein-protein docking. I'd like to kindly ask for your help with two questions.
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Hi Will,
Thanks for your great tool!
I was trying to use mokapot in combination with sage outputs to look at enzyme free peptidomics samples. Unfortunately, when I run this with a simple subset an…
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I've been running Roary in order to use the presence/absence tables as input for training ML models (to identify sub-species groups based on shared genomic features). As I don't really care if genes a…