bridgedb create-bridgedb-metabolites issues

bridgedb / create-bridgedb-metabolites

Create BridgeDb identity mapping files from HMDB, ChEBI, and Wikidata

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[BUG] Mapping ChEMBL IDs to ChEBI IDs using the 16/04/2024 metabolite bridge file produces inconsistent duplicate ChEBI IDs

#45 pklemmer opened 2 months ago
1
possible bug in Wikidata<>HMDB mappings

#44 egonw opened 1 year ago
0
check of 'group of stereoisomers' is included

#43 egonw opened 1 year ago
1
Check HMDB blacklist item after update

#42 DeniseSl22 opened 1 year ago
1
Check KEGG query #nwobridgedb

#41 DeniseSl22 closed 1 year ago
1
add grant info to Figshare release #nwobridgedb

#40 egonw closed 2 years ago
1
Update ChEBI secondary IDs #nwobridgedb

#39 DeniseSl22 closed 1 year ago
4
Update HMDB secondary ID reading #nwobridgedb

#38 DeniseSl22 opened 2 years ago
0
need to be able to run this as Docker image

#37 egonw opened 2 years ago
0
Use schema 4 (for secondary IDs) #nwobridgedb

#36 egonw closed 1 year ago
1
Create CITATION.cff

#35 hbasaric closed 2 years ago
1
Updated/corrected release page

#34 egonw closed 2 years ago
0
Extend names.rq for additional chemical roles

#33 DeniseSl22 opened 3 years ago
1
Check retired LIPID MAPS IDs

#32 DeniseSl22 closed 3 years ago
4
Updated to BridgeDb 3.0

#31 egonw closed 2 years ago
0
Extend the code to handle a selection of Wikidata items differently

#30 egonw opened 3 years ago
7
Updating mesh database name

#29 DeniseSl22 closed 3 years ago
2
added mesh as datasource

#28 DeniseSl22 closed 3 years ago
0
Added mesh query.

#27 DeniseSl22 closed 3 years ago
0
(Jenkins) build failure for Bridgedb 2.3.8 (secondary IDs).

#26 DeniseSl22 closed 3 years ago
1
Jenkins build failure for names.rq

#25 DeniseSl22 opened 3 years ago
7
Add test for not standard inchi's in Wikidata

#24 DeniseSl22 opened 4 years ago
1
Add Protein IDs for hormones?

#23 DeniseSl22 opened 4 years ago
1
Add VMHlife Metabolites (Recon)

#22 DeniseSl22 opened 4 years ago
1
added RDF to the database and use it in VoID Tool

#21 The-Marvex closed 3 years ago
3
Wrong InchiKeys

#20 DeniseSl22 closed 5 years ago
6
DrugBank identifiers wrong in Derby file

#19 egonw closed 5 years ago
5
upgrade to BridgeDb 2.3.1

#18 egonw closed 5 years ago
1
Add drugbank <> wikidata mappings

#17 DeniseSl22 closed 5 years ago
1
Updated code for IuPhar, ChEMBl and Wikidata mappings

#16 DeniseSl22 closed 5 years ago
1
Added iuphar to script

#15 DeniseSl22 closed 5 years ago
1
Update createDerby.groovy for BioDataSources

#14 DeniseSl22 opened 5 years ago
2
Updating fork

#13 DeniseSl22 closed 5 years ago
0
Add IUPHAR <> wikidata mappings

#12 DeniseSl22 closed 5 years ago
1
No mapping to Wikidata in PV?

#11 DeniseSl22 closed 5 years ago
2
add ChEMBL<>Wikidata mappings?

#10 egonw closed 5 years ago
10
check if CAS 617-48-1 gets picked up properly

#9 egonw closed 5 years ago
2
HMDB secondary IDS

#8 DeniseSl22 closed 6 years ago
1
resolve pull request merge conflict

#7 DeniseSl22 closed 6 years ago
1
update BridgeDb

#6 egonw closed 6 years ago
0
More stats for new releases

#5 DeniseSl22 opened 6 years ago
1
New HMDB ID integrated

#4 DeniseSl22 closed 6 years ago
1
Compatibility with new HMDb IDs

#3 DeniseSl22 closed 6 years ago
1
Weird Mapping HMDB

#2 DeniseSl22 closed 5 years ago
1
set up a creation job in Jenkins

#1 egonw closed 6 years ago
0