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Right now the caching uses one tmp directory per obs network for the submission of the parallel job (like `/lustre/storeB/users/${USER}/submission_scripts/qsub.tmp0ldqqvwl`.
Just use one submission…
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SYCL backend MKL FFTs fail when `-DYAKL_DEBUG` is combined with low compiler optimizations.
Reproducer on JLSE:
```bash
qsub -I -t 120 -n 1 -q arcticus
cd ~/YAKL/unit/build/machines/jlse
source…
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I struggle with launching simple parallel jobs under PBS 19.0.0 on Debian 11 after upgrade to Open MPI 5.0.0rc10, even though 5.0.0rc9 seemed to worked according to (my) expectations. I build the soft…
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Hi,
I was trying to install kinbot locally sourcing from github. Due to python binding requirment or pybel for openbabel, which both did not work in my system. Therefore I installed kinbot and open…
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**Describe the issue**
```
executor > local (2), slurm (1)
[bd/d5de94] process > create_input_csv_metapipeli... [100%] 1 of 1 ✔
[97/9e2fa0] process > create_config_json [100%] 1 of 1 …
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Many clusters still run on PBS. How can we make running PBS as straight forward as slurm?
An initial test for pbs in the submit script here:
```
snakemake
--rerun-incomplete --jobs 5…
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Hello,
I am getting the error "xml.etree.ElementTree.ParseError: mismatched tag: line 27, column 4" on a new funannotate installation when running funannotate annotate on test data " funannotate te…
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Currently the default value for `qsub.jobid` is `'Your job ([0-9]+) .*'`, but this is not very generic. A pattern that matches any group of consecutive numbers, possibly with non-numbers before and/o…
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Hi @MaestSi! Thank you for providing the nextflow pipeline for m6anet.
I gave a try to run your pipeline but I got an error. As I am not familiar to use nextflow, I don't know how to deal with this …
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* when submitting the job(s), check argument `where_to_run`: e.g., `${CBICA_TMPDIR}` or `/cbica/comp_space/$(basename $HOME)`
* this is also the argument of `participant_job.sh`
* first check out…