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---
id: tellurium
version: 2.2.8
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_tellurium/8876681e038fc35a36775494642d7284579ab226/biosimulators.json
specificationsPa…
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I'm trying to run amici on google colab, but it happens that I obtain the following errors:
```
INTEL MKL ERROR: /lib/x86_64-linux-gnu/libmkl_avx2.so: undefined symbol: mkl_sparse_optimize_bsr_trs…
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Maximum growth: 34.14842956394264.
WARNING:root: Removing reaction bounds when larger than the cobra-threshold of 1000.
C:\Users\cjrodriguezf\Documents\CNAPY\CNApy\miniconda\envs\cnapy-1.1.8\lib\si…
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**The Bug**
When running `NetPathMiner::SBML2igraph` I receive the error message:
```
> NetPathMiner::SBML2igraph('./BIOMD0000000404.xml')
Error in NetPathMiner::SBML2igraph("./BIOMD0000000404.xm…
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**Submitting author:** @nplathe (Nick Plathe)
**Repository:** https://github.com/nplathe/pyJSON-Schema-Loader-and-JSON-Editor/
**Branch with paper.md** (empty if default branch):
**Version:** v1.0.0
…
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---
id: tellurium
version: 2.2.8
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_tellurium/b1fa07bbbb18b985fe509a867f8e88e3ccce8e76/biosimulators.json
specificationsPa…
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Connect with Devlin to use his tool to identify cycles that are generating ATP/etc.
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Matlab had a hand-crafted way of encoding splines in the symbolic interface. However, SBML does not explicitly support splines, for pySB I'm not sure...
I would like to discuss how to best address th…
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Just noticed, that there was a typo in
https://github.com/sys-bio/makesbml/blob/282d2c85c89700ac3f92254027bb034bc6a7f97e/index.html#L11
it should clearly read `SBML`.
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Currently, we get weird errors somewhere in the parseMEtaboliteInfo function if we supply an invalid SBML file.
This is not very user-friendly.