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Currently the wording is "A species in SBML refers to a pool of entities that \(a\) are considered indistinguishable from each other for the purposes of the model, \(b\) participate in reactions ..." …
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The sentence in Background "This package only provides a way of annotating a model." seems a bit confusing, because the groups package does not add anything to the annotation tag of model components. …
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The paragraph starting at page 8, line 4 "Note that..." is not clear to me. Of course, referenced objects must be normal model components. What is the problem here being addressed?
Reported by: andr…
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We have no rule that says what the substanceUnits on a Model should be; along the lines of
The value of the attribute substanceUnits on a Model object should be either the units \mole",
\item", \a…
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Is [`LanKN2011_Final.xml`](https://github.com/sys-bio/temp-biomodels/blob/master/final/BIOMD0000000622/LanKN2011_Final.xml) different than [`BIOMD0000000622_url.xml`'](https://github.com/sys-bio/temp-…
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Hello ! How do I create the seeds and target files in sbml format ? On github page has exemples but I was unable to download.
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esbuild seems to transform json imports relatively inefficiently.
Given the following `index.ts`:
```ts
import db from './database.json';
const mime = db;
export default mime;
```
The…
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Raised by Lucian during the SBML Editors\\\\\' meeting during HARMONY 2012:
Consider a model with a species with no rules about how the species itself changes \(no reactions, no rules\), with the a…
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Raised by Lucian during the SBML Editors' meeting during HARMONY 2012:
Consider a model with a species with no rules about how the species itself changes \(no reactions, no rules\), with the attrib…
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We might want to consider putting an ID on rate rules and letting people use them in MathML. The concept of using a derivative inside an equation is fairly standard, and would expand the range of mod…