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Request that add some @amandamok's simulated ribosome profiling data into RiboViz as another vignette. This should provide ideal testing that reads are correctly aligned and of codon-level and gene-le…
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Hi Inigo,
I have multiple samples where Circle-Map will fail with:
`"An error happenend during execution. Exiting"`
stderr:
```
[E::idx_find_and_load] Could not retrieve index file for 'outpu…
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First time using this package. I have run an alignment with linclust and am wondering if there is a way of extracting the positional information of the clusters and the distance between them, with the…
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I am running an analysis on two genomes - one with a pseudochromosome level assembly, the other with a scaffold level assembly. Using the provided command for lastz took several days for the program t…
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Hi Erik
I've run Edyeet with 2 chromosomes of the same variety, but different assembly versions (related to the issue I posted for smoothxg: https://github.com/ekg/smoothxg/issues/2). I also ran wi…
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obtain files for
P. generosa
R. philippinarum
C. virginica
C. gigas
Run Orthofinder on Bluewaves
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Hi dear team,
I performed RNAz prediction on an alignment of viral genomes of a specific viral species. To this aim, I first divided the alignment to windows using rnazWindow.pl, then perform RNAz …
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Hi Jon,
I am running funannotate in a conda env created recently, But when I executed the test commands "funannotate test -t all --cpus 5", It reported an error, What should I do to make funannotate …
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Introduction
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DeepChem's support for protein-based deep learning is still pretty early-stage. In this issue I propose a framework for adding support to DeepChem for doing more systemat…
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Hi,
This is not an issue, but I'm just looking advice on this problem I've been trying (with limited success) to tackle on my own for a while.
First, I've been using salmon for years and I love …