hputnam Geoduck_Meth issues

hputnam / Geoduck_Meth

DNA methylation of geoduck exposed to ocean acidification treatments

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Identify DNA methylation machinery in genome

#28 shellywanamaker opened 4 years ago
2
get GO slims from GSEAbase for Panopea-generosa-genes-annotations.tab

#27 shellywanamaker opened 4 years ago
2
update DMR tables

#26 shellywanamaker closed 4 years ago
1
Include all output in GO supp tables and sort by sig p value

#25 hputnam opened 4 years ago
0
Include all output in DMG supp tables and sort by sig p value

#24 hputnam opened 4 years ago
0
Obtain protein fasta files and run Orthofinder

#23 hputnam opened 4 years ago
4
Review DMG methods for clarity/reproducibility

#22 shellywanamaker opened 4 years ago
0
Add OSF citations in manuscript

#21 shellywanamaker opened 4 years ago
0
Update repo readme

#20 shellywanamaker opened 4 years ago
0
Confirm OSF files are up-to-date

#19 shellywanamaker opened 4 years ago
0
Update OSF readme

#18 shellywanamaker opened 4 years ago
2
Write manuscript intro

#17 shellywanamaker opened 4 years ago
0
Confirm origins of Panopea-generosa-genes-annotations.tab

#16 shellywanamaker closed 3 years ago
8
Improve GO semantic similarity visualizations

#15 shellywanamaker opened 4 years ago
0
GOseq term retrieval failing

#14 shellywanamaker opened 4 years ago
0
streamline GO annotation

#13 shellywanamaker opened 4 years ago
0
reveiw bioinformatic and analytical pipeline

#11 hputnam opened 4 years ago
3
Does KEGG Annotation exist for P. generosa?

#10 hputnam closed 4 years ago
2
Start readme.md in code section

#9 shellywanamaker closed 4 years ago
1
Clean up code section

#8 shellywanamaker opened 4 years ago
2
Update methods with new DMR analysis

#7 shellywanamaker closed 4 years ago
2
generate genomic feature stats analysis and figure

#6 shellywanamaker closed 4 years ago
1
Update d145 DMR heatmap

#5 shellywanamaker closed 4 years ago
1
Update OSF for trimmed reads and everything post alignment

#4 hputnam closed 4 years ago
20
Run Bismark .. again

#3 sr320 closed 4 years ago
0
Compare genes between DMGs and DMRs with Venn Diagram

#2 hputnam closed 4 years ago
1
compare new CpG stats with paper

#1 yaaminiv opened 4 years ago
0