-
Hi!
I am performing a large assembly, but I get the following assert error in the consensus step:
```
alignEdLib()-- WARNING: updated tigbgn 0 > tigend -418 - tiglen 74691 utgpos -1920--418 pad…
-
hi, there,
The isONclust2 example code is listed below.
```
# sort reads and write out batches:
isONclust2 sort -B 50000 -v ens500.fq
# initial clustering of individual batches:
isONc…
-
Hi I have been running a msprime simulation on my cluster (rescomp2, SGE) and have come across a bug in msprime.
Here is the output log:
```
Activating conda environment: /gpfs3/well/mcvean/mtute…
-
Issue from @groadabike
Gerardo is getting an error when submitting a job on ShARC with `qsub`:
queue.pl: Error submitting jobs to queue (return status was 32512)
The job script as as follo…
-
Hi,
Q1. Is it possible to host the openondemand application on a server which doesn't have direct access to the job scheduler config/commands (but can reach it via ssh)?
example -
Machi…
-
Hey,
I got an error while running ANIb on a large dataset (>2k bacterial genomes).
I installed pyani via conda, version 0.2.10 and ran this command:
`average_nucleotide_identity.py -i ./ -o ANIb_…
-
Hello,
We are trying to apply this pipeline to our set of reads (aprox. 7 million cDNA reads from a transcriptomic experiment).
We succesfully reach the clustering step (batches step works well, obt…
-
**Description**
This is related to #4033. I want to schedule a LXD container with VCPU=48 to a host with 2 socket 12 core 24 threads and pinned threads but the scheduler can not find the host resourc…
-
### Version of Singularity:
```
singularity version 3.6.2
```
Running singularity on a server (build below), most often run via qsub (SGE) but for the purposes of testing I have just been runn…
-
I hope someone can help me. I am trying to do parallel computing with Julia on our SGE grid system, which I normally only fed with shell scripts.
When I run for example `addprocs_sge(5,res_list="ct…