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Occasionally Surf's dcache in not accessible, for hours at a time. This is annoying for researchers (or during demo's). However, if you use ewatercycle for teaching this is terrible.
@sverhoeven su…
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I would like to get routing restricted by custom region. As I understand, partially it could be done with country_crossing_penalty, but what I need - fully customizable region of routing, not just sin…
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Dear Dengzac,
After reeding your publication I would try your method contig-extender to my data contigs.
Ok on lcoal following your installation instructions and exemple data, using Docker.
But…
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The last step `findCancerMutations` finishes with an error due to the missing columns in the CosmicMutantExportCensus.tsv file.
Error:
```Command error:
INFO: Converting SIF file to tempora…
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*Describe the bug*
I am running fcs-adaptor.sh v0.4.0 using Singularity on several genome assemblies generated using SPAdes v3.15.5. Nearly all of them run without error, but I consistently get a per…
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Hello everyone,
I have tried to install checkm2 through all the recommended avenues, conda, mamba, etc. Can't make it.
When I use conda, the installation get stuck on the "Solving environment: …
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`singularity exec -B ${PWD}:${PWD} ${PWD}/cactus_v2.9.0.sif cactus-pangenome ${PWD}/js ${PWD}/$seq --outDir ${PWD}/xxx.pg --outName xxx-pg --reference xxx --vcf --giraffe --gfa --gbz --maxCores $cpu -…
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Hello! Thank for making this action! I am close to getting it working for my project, but am running into the following error message. The `setup-singularity` action step completes fine, but when sub…
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Hello @gmartinezredondo,
Thanks for developing this great tool! I am very excited to test it on my own species, but I ran into some difficulties while running it. I am using a local high-performanc…
fka21 updated
6 months ago
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## Help yourself
* I did try to restart Kodi :-)
* I checked the [PKC Frequently Asked Questions on the PKC wiki](https://github.com/croneter/PlexKodiConnect/wiki/faq)
* I did try to reset the Kodi…