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## **Describe the bug**
caper.cromwell.WomtoolValidationFailed: RC=1
## **OS/Platform**
- OS/Platform: [e.g. Ubuntu 18.04, Google Cloud, Stanford Sherlock/SCG cluster, ...]
- Conda version: 4.13…
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Hi Tomas, Ziheng,
Hope you are both well. When I run these files on my cluster (with an sbatch file) with threads = 12 or 16 or 24, it seems to crash right when it reads the map file ("Parsing map …
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if I not config a partition, the progarm run wrong!
![image](https://user-images.githubusercontent.com/24283291/220319251-c6154a48-ed3f-4cc8-ada6-0213b9b31e83.png)
![image](https://user-images.g…
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Hello trust4,
Version TRUST4 use Output all the required fields for AIRR format https://github.com/liulab-dfci/TRUST4/pull/138
CMD
```
run-trust4 -f {params.REF1} -t 24 --ref {params.REF2} \
…
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We implemented a 3d finite-volume simulation using Legion (`v22.06.0`) in C++. The solution produces correct results for arbitrary problem and partition sizes. We want to execute our implementation us…
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Containers should be built from the repo itself not here. We can keep the vagrant or other VM stuff here, we just just remove container stuff.
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## Proposal
HoloPy version 4 should rely on [`pymc`](https://www.pymc.io/welcome.html) for inference.
## Rationale
When we first included Bayesian inference in HoloPy, the options for efficient …
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@cnluzon I noticed that you are running the pipeline in cluster mode (submitting individual jobs to the cluster, running snakemake only on the head node). I’d like to mention that there’s an alternati…
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**Describe the issue**
Trying to run the LTR Pipeline alone to add to some libraries and then re-mask some genomes. So far, this is only happening with one genome. I use the -LTRStruc flag for Repe…
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Hi Jiarong et al,
It was good to see that internally there is a snakemake workflow, so I have tried it already on our HPC cluster with LSF queueing – works happily on a small test dataset.
Do …