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On a test dataset I compute neighbors and then immediately compute/plot both tSNE and UMAP and show them next to each other. Sometimes, we get pretty dramatic differences such as the one attached. I…
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Hi Todd,
I've run SPM on a lower limb, vector coding data looking for significance between anticipated and unanticipated conditions of a dynamic cutting task. unfortunately due to the relatively larg…
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Given that several of the methods available through dyno require root cells, or can make use of time point data, it is unclear at what step you add these to the model. Should these always be added aft…
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Not sure if you want to take issues yet, no problem if not, I'll just close it.
I've installed all packages. Did an extra Pkg.build("VectorizationBase"), after installing all packages in .julia/dev…
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Hello @falexwolf and @theislab
This issue is for discussing the wrapper for your trajectory inference method, PAGA, which we wrapped for our benchmarking study ([10.1101/276907](https://doi.org/10.11…
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Hello @dcellwanger
This issue is for discussing the wrapper for your trajectory inference method, CellTrails, which we wrapped for our benchmarking study ([10.1101/276907](https://doi.org/10.1101/276…
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Hello @herrinca and @KenLauLab
This issue is for discussing the wrapper for your trajectory inference method, p-Creode, which we wrapped for our benchmarking study ([10.1101/276907](https://doi.org/1…
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Hi,
i'm running a dynwrap command `infer_trajectories` as follows:
>model_gng Loading required package: dynutils
Installing uwot
Warning in download.packages(x$name, destdir = dest_dir, repos = x…
PGuen updated
5 years ago
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Hi, I have some set of data which needs to be batch corrected before making time-series plots.
I am thinking of using `Seurat` for batch correction upstream of Monocle but due to the follow [issue](h…