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Hi @brentp,
While running `smoove call` using two samples (tumor-normal), I get exit 0 for most but a few samples having following error:
```
[smoove] 2018/10/16 09:22:28 AAEX03026072.1 1000000…
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Hi, I have read many posts about filtering Lumpy SV results after genotyping with SVTyper but there are still questions confusing me.
1. For normal sample, should I filter germline SV following these…
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Hi,
I am interested to find out if it is possible to load a track as a JSON object rather than a link to a file. In particular I would like to build a backend API to generate the necessary data to l…
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Hello,
I am observing erroneous segmentation on the BAF plots. Some of the segments also don't seem to align well with the average BAF values. Is BAF segmentation performed independently from the l…
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Database managing and updating policy within Galaxy.
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Oncology Treatments
- Requestor: Michael Gurley (m-gurley@northwestern.edu), Rimma Belenkaya (rimma.belenkaya@gmail.com)
# Background
We want to represent oncology treatments within the OMOP CDM…
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What is the difference between the manta disease model (--tumorBam) and germline model (--bam)? i.e, different calling algorithms, different filtering criteria? Is there some detailed documentation …
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- [x] [create a issue on datahub](https://github.com/cBioPortal/datahub/issues/new) before curating a study (one issue per study) and copy this checklist to the issue tracker
- [x] List information o…
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Dear Keegan,
I am working on whole genome bisulfit seq data from 5 different brain tumor types and I would like to investigate what these tumors have in common and what distinguishes them.
Does 'dm…
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Hi.
We need multiple samples support or GVCF support for mutect2 tumor-only mode.
so we can diff the ./. and 0/0 in multiple normal samples.
There is neither multiple samples support nor GVCF…