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This is a case where the SwaggerParser from 1.0.36 works fine but the conversion to the OpenAPI with 2.0.1 fails. Clearly the dates are in an unexpected format but I expect specs that parse in Swagger…
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Hello, could you please help me?
I tried to repeat the tutorial, and that's what i've got:
Left-top - segmented lungs
right-top - tumor's mask
left-bottom - predicted mask.
The predicted resul…
ghost updated
6 years ago
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@samuelklee commented on [Fri May 12 2017](https://github.com/broadinstitute/gatk-protected/issues/1039)
Hooking up a siHMM (or some variation) to the coverage model from https://github.com/broadin…
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Hello all
I was trying to port ANTsR to Windows and ended up with ITK not creating reasonable Windows DLLs. The internet says this depends on internal issues in ITK (Defs of general classes in ITK, w…
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Removing 259 variants outside intervals.
INFO [2018-02-25 11:14:01] Setting somatic prior probabilities for dbSNP hits to 0.000500 or to 0.500000 otherwise.
Error: logical subscript contains NA…
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How to calculate CRF parameters
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Hi
Dear Mr. Kamnitsas
Thanks for your great work. Now I studied your high quality papers "DeepMedic for Brain Tumor Segmentation" and "Efficient Multi-Scale 3D CNN with Fully Connected CRF for Acc…
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I used the flat reference option, to try to validate some samples for which a normal was not present. It causes a genome-wide copy loss effect, across all samples.
I confirmed that all the values i…
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Hi all,
Now that most of the hg38 reference files are in place (thanks for adding them up), I wonder which is the minimum command-line to apply to a wig file created from an hg38 bam file without a…
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Hallo
I'm trying out the newest development code, and got an segmentation fault error when running the cnvkit segmentation functionality. Running on single core, gives practically the same error ou…