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Currently, dbNSFP takes about 20ms to annotate a single variant. Unfortunately, this makes it the slowest datasource and is causing issues annotating larger VCF or MAF files.
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#### Bug Report Checklist
- [x] Have you provided a full/minimal spec to reproduce the issue?
- [x] Have you validated the input using an OpenAPI validator ([example](https://apidevtools.org/swagg…
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Hey there,
I am reporting a problem with Biopython 1.70, Python version 3.6.4 on Linux-4.15.3-1-ARCH-x86_64-with-arch.
It appears that the nucleotide sequence is incorrectly parsed, when loading…
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**Describe the bug**
I followed the following instructions to build the docker image: https://conductor.netflix.com/gettingstarted/docker.html
But the step 2 fails (`docker-compose build`)
It seems…
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Code:
```python
#Specify path to the coco.json file
path_to_annotations = "data/coco.json"
#Specify the path to the images (if they are in a different folder than the annotations)
path_to_images …
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As proposed in #9 and raised in #18, we need a 'match' function that will give you Segmentation elements for a query region set.
It's relatively straightforward for an exact match, but if matches a…
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Hello,
I want to use Mikado to score a subset of StringTie models that we have classified as potential lncRNA. I want to compare my assembled transcripts of interest with a trusted reference annota…
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Using tabix version 1.9 on CentOS 7
I am querying a public indexed dataset (gnomad annotations from the Broad institute) using tabix together with a regions file in BED format, and found that that …
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I'd like to analyze my source code with the [Checker Framework](http://types.cs.washington.edu/checker-framework/), in particular using its [Nullness checker](http://types.cs.washington.edu/checker-fr…
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Hi,
I am encountering an issue similar to what was described earlier (#3429) in gatk-4.0.7.0, in which I find that the GenomicsDBImport combines gVCFs but leaves the majority of variants out of the …