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Hi Davide
I'm trying to run `zinbwave` on a moderately large dataset:
```
R> se
class: SummarizedExperiment
dim: 2572 8818
metadata(0):
assays(1): counts
rownames(2572): ENSG00000000419…
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This message has been annoying us for a long time.
I'm opening an issue because I found where it comes from. The problem is that the class "Annotated" is defined both in the S4Vectors package (a depe…
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Dear iSEE developers,
I am looking at the first example of the [Sharing information across iSEE panels](https://github.com/iSEE/iSEE/blob/master/vignettes/links.Rmd) vignette, learning how to selec…
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Hi I have a BPCells object and I did sketch integration by different methods (rpca, cca, harmony etc). the umap of the sketched assay for each method looks different which makes sense but then when i…
Flu09 updated
3 weeks ago
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https://community.rstudio.com/t/rstudio-connect-packrat-chokes-on-bioconductor-packages/36706
This community thread discusses changes to R 3.6.0, for which:
> Bioconductor packages need to be in…
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Hi, @mcalgaro93, when using the createPositives function, does using `slot = "pValMat", colName = "rawP", type = "pvalue"` (positives1 object in the code below) mean that the features are ranked by ra…
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Following from https://github.com/wrathematics/spm/issues/2#issuecomment-319073693, here's the full output. I'm using [Apple's Accelerate BLAS](https://developer.apple.com/documentation/accelerate/bla…
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## ❓ Questions and Help
@[ZhihaoDU](https://github.com/modelscope…
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Hi,
I just started using the new `html_document2` style and noticed a couple of things. The figures are smaller than in `BiocStyle::html_document` and `rmarkdown::html_document`. I see at https://g…
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Hi,
I just looked at the wrapper to call susie_rss().
Even though you add **n** as an argument to **susie_args** list, , and this should be properly passed to the do.call function wrapping susie…