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Compile a table of relevant papers with brief summary.
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If we become frustrated with dnapars, here are two alternatives:
* PAUP* : [binaries](https://people.sc.fsu.edu/~dswofford/paup_test/) [manual](http://paup.scs.fsu.edu/Cmd_ref_v2.pdf)
* POY [POY4]…
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DNAML assumes that any insertions in the tip alignment started at the root. And since the naive is technically not the root but a tip, it's inferred from our lineage alignments (where we manually put …
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lauranoges [Feb 26th at 5:28 PM]
@csmall @matsen I just discovered a pretty big issue today that may be my fault for not being attentive enough but: QA255.157-Vk seed is part of a clonal family tha…
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Hi Richard, Dear colleagues,
I am using the treetime mugration tool and it works fine for most of my data but I am having this kind of error message on my latest dataset
I wonder if there is a limit…
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@psathyrella has expressed interest in seeing Local Branching Rate (LBR) and/or Local Branching Index (LBI) against affinity in ancestral sequence reconstruction visualizations. This could go many way…
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@rneher Can ancestral_reconstruction.py be used for amino acid sequences ?
ghost updated
5 years ago
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**Submitting author:** @marekborowiec (Marek Borowiec)
**Repository:** https://github.com/marekborowiec/spruceup
**Version:** v2019.1.1
**Editor:** @csoneson
**Reviewers:** @iimog, @gavinmdouglas
**…
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I've decided to consolidate all of the files that are currently not working into one list so it's easier to see. Will update as I retest and as they get fixed/deleted.
Seg Faults:
- [x] TestClade…
srwis updated
5 years ago
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