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We've been running Spaceranger on Terra, running it in full (run_count & run_mkfastq) causes an error when trying to run version "3.0.0".
Spaceranger mkfastq points to gcr.io/broad-cumulus. Latest …
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#### Are you using the latest version of [samtools](https://github.com/samtools/samtools/releases/latest) and [HTSlib](https://github.com/samtools/htslib/releases/latest)? If not, please specify.
(ru…
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e.g. bcl2fastq_log
This is a variable in the config file used by both demultiplex.py and upload and setoff workflows
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recipe | lints
----------------------|----------------------
recipes/2pg_cartesian | ['missing_license']
recipes/advntr | ['should_be_noarch']
recipes/aenum | ['in_other_channels'…
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To avoid having half-empty rows from broken up samples, have the option to merge the statistics given in General Statistics. This shouldn't affect plots or any data in sections, _only_ General Stats.
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## Description
This week a flow cell needed to have manual modifications to its sample sheet, in a way that it failed the implemented validation. This modified sample sheet will be needed when the …
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### Description of bug
Hi there.
I found two bugs.
1. When running MultiQC `v1.22.*`, the software file pattern `*_mqc_versions.(yml|yaml)` is not being recognised or the file is ignored by som…
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### Description of bug
I have tried custom content to plot heatmap in multiqc report based on some quality check criteria.
When input file is in same working directory, it is generating heatmap…
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## Description
There is a lot of infrastructure in cg for flow cells demultiplexed on the sequencer, which is currently unused because we don't demultiplex in the sequencer. It was tried in the pas…
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### Project short name:
HumanLungCellAtlas2020
### Primary Wrangler:
Ami --> Ida
### Secondary Wrangler:
Arsenios
### Associated files
* Google Drive: [folder](https://drive.google.com/drive/fol…