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Dear all,
I ran the test files and work perfectly. When I ran my own data, I have a problem with the Strain clustering and assembly step. I have this problem
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Invalid…
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Hi Amina,
I cloned your code on ImmunOMICS, and tried to run `sbatch job.sh` with the paths changed. Below is the error output:
```
KeyError in file /beegfs/homes/achan/git/ImmunOMICS/snakefile, li…
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I'm not able to import an installed dependency when running tests with system-packages. I have a ~convoluted setup with:
1. A system python installation with site-packages (global, maintained by othe…
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Hello,
I am using Sharc 3.0.1 with Orca.
When I try to calculate the initial conditions I get the error:
FileNotFoundError: [Errno 2] No such file or directory: '/beegfs/xxx/Sharc/init/ICOND…
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Hi jiarong,
I have met this error "Error in rule classify_by_group" when I run the vs.
After scanning the pre-answers, I tried all three options to install the vs2. But they all reported the same e…
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I have 4 images, and batch size is only 1. but when I start the
`begin_training(train_dataset_dict, val_dataset_dict, model_dict, loss_dict, configs)`, I have RuntimeError: CUDA out of memory. Tried…
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Could you please specify which pathfinder task is used in the paper? I'm assuming it's pathfinder32, but which difficulty?
Also, the task is broken. There is no way to specify the path to the data,…
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Hi thank you so much for this tool.
I'm writing again because I cant manage to make it run on my real data.
I create a conda env with Python2.7, I notice that on previous issues gawk was necessary…
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* eggnog2gbk version: emapper2gbk 0.3.0
* Python version: 3.10.1
* Operating System: Ubuntu 20.04
* eggnogmapper: 2.1.9
### Description
I used the `genes` mode to get the gbk from my genomes,…
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Hello,
I am trying to run the pyInfinityFlow pipeline and want to have all the observations.
It seems with the settings there is no clear option to have all the observations after running the pi…