CSB5 OPERA-MS issues - Githubissues

CSB5 / OPERA-MS

OPERA-MS - Hybrid Metagenomic Assembler

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Polishing [9/9] takes long time !

#94 Hedi65 opened 2 months ago
3
Where could I find assembly graph?

#93 marinachen opened 3 months ago
1
Error when run strain cluster

#92 Xinpeng021001 opened 4 months ago
5
Suggestion for making GTDB database

#91 Xinpeng021001 opened 4 months ago
8
Different polisher

#90 PSchneeb opened 8 months ago
1
Error in during reference based clustering (line 35: 38236 Floating point exception(core dumped))

#89 ValeriiaLadyhina opened 9 months ago
2
Error in generating OPERA‐MS‐DB from GTDB release

#88 ValeriiaLadyhina closed 9 months ago
2
link problem of check-dependency

#87 swching closed 10 months ago
4
Short reads only

#86 steven-bioinfo closed 11 months ago
3
Nucmer error

#85 yutoupai opened 1 year ago
1
Error during installation step: perl OPERA-MS.pl check-dependency

#84 bjkramerumnedu opened 1 year ago
1
"Use of uninitialized value" and "command not found" error while running OPERA-MS

#83 faye92sun opened 1 year ago
1
Cannot install OPERA-MS: makefile error

#82 faye92sun closed 1 year ago
8
contigs contain 'NNNNNN' ??

#81 ye00ye opened 1 year ago
9
reference genome incomplete

#80 melop opened 1 year ago
1
Error in the long read processing

#79 ArtyomVodnev opened 1 year ago
12
command line help should have the option --no-polishing instead of --polishing

#78 danpal96 closed 1 year ago
1
Missing parameter

#77 Unaimend closed 1 year ago
4
Error during SPADES

#76 Unaimend closed 1 year ago
1
Contigs vs scaffolds.

#75 Unaimend closed 1 year ago
4
Error in during pilon. --Java

#74 wdp9966 opened 1 year ago
1
opera-ms-db version

#73 Vikasmh opened 2 years ago
2
GAPFILLING - Nucmer error

#72 drelo closed 2 years ago
5
Compilation error linked to commit 7423f1c and 7599f22

#71 jsgounot opened 2 years ago
3
Error with Mummer

#70 iek opened 3 years ago
12
Multiple Short Reads

#69 iek closed 3 years ago
4
opera error bwa mapping

#68 H1889 opened 3 years ago
6
OPERA-MS fails at polishing step with mapping error

#67 jnesme opened 3 years ago
9
Recommendation for data QC before assembly

#66 dplichta opened 3 years ago
1
Ways to speed up Pilon

#65 kattweigh closed 3 years ago
1
'values' not found

#64 clb21565 opened 3 years ago
3
Reference clustering - Nucmer error

#63 niexiaoqing opened 3 years ago
14
Make a lot more short read assembly parameter configurable from the opera command line

#62 Unaimend closed 3 years ago
3
Update megahit

#61 Unaimend closed 3 years ago
4
Error during tilling generation. Please see /XXX/XXX/assemblyA1_/intermediate_files/opera_long_read/GAPFILLING/TILLING/tilling_1.out and /XXX/XXX/XX/XXX/assemblyA1_/intermediate_files/opera_long_read/GAPFILLING/TILLING/tilling_1.err for details.

#60 Caiyulu-818 opened 3 years ago
11
Chance of adding --continue from where program terminated

#59 lijierr closed 3 years ago
1
No warning/error message while program terminated early

#58 lijierr closed 3 years ago
1
problem at step Strain clustering and assembly: Invalid version format (non-numeric data)

#57 DDavila10 opened 3 years ago
10
no contigs.fasta output, problem with Gap filling step

#56 DDavila10 closed 3 years ago
12
Error in the long read processing

#55 EmmettPeng opened 3 years ago
6
Test data fails at gap-filling step, returns to prompt, leaves core file and empty consensus_cmd.sh.log file

#54 RachelRodgers opened 3 years ago
8
Optimizing assembly of (very) large metagenomes

#53 clb21565 opened 3 years ago
1
Bug K-Mer size parameter

#52 Unaimend closed 3 years ago
2
CIGAR and sequence length are inconsistent

#51 Unaimend opened 3 years ago
5
Uninformative run failures at polishing step

#50 mhibberd opened 4 years ago
1
How to download or make database?

#49 YongxinLiu opened 4 years ago
1
Can your provide the Conda install?

#48 YongxinLiu opened 4 years ago
13
extract_read_sequence.pl keeps running endless

#47 dawnmy closed 4 years ago
2
How to skip Polishing step?

#46 chihminchang opened 4 years ago
3
Error in `generate_assembly_stats.pl` ?

#45 susheelbhanu closed 4 years ago
2