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Hello,
I am new to the rampage seq analysis and I am having a few problems. My bed files were generated using rampage_peaks.sh. However, when I run idr on those files I get the following message. I t…
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```
> sudo python setup.py install
running install
Checking .pth file support in /usr/local/lib/python2.7/dist-packages/
/usr/bin/python -E -c pass
TEST PASSED: /usr/local/lib/python2.7/dist-packages/…
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I need to get familiar with Django and a first nice exercise to do this would be to port the current SeqTubeMap Node.js backend to Django.
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I need to use an updated version of refseq. Is it available any script to download the current version of the file 'genes.refGene' or I should to build it by hand?. Thank you. Angela
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### What container were you trying to use, and how were you attempting to use it?
[dongyibo@login8 variants]$ singularity exec -B ./:/data docker://staphb/snpeff:5.1 snpEff ann Candida_auris /blue/bp…
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Hello everyone,
After reading the "Uncovering deeply conserved motif combinations in rapidly evolving noncoding sequences" paper, I wanted to install your software in order to apply your work on my …
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1. I was annotating a mammalian genome and the program crashed. There does not appear to be intermediate files (beyond logs). Before I profile is it likely I just went above 500Gb of RAM and should…
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**Describe the bug**
Unable to import bigwig files stored on a remote server.
Originally posted [in the `rtracklayer` GH repo](https://github.com/lawremi/rtracklayer/issues/73) and was directed by…
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Testing on macOS, with numpy-1.26.4 these work, but break on numpy-2.0.0b1
```
$ pip uninstall scipy matplotlib
...
$ pip install numpy==2.0.0b1
...
$ python test_Align_bigmaf.py
test_reading…
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Hi Simon,
Many thanks for your help in my last issue. It has been fixed. I just have another question: does gemBS have any parameter to let you specify target regions and only extract the SNPs insi…