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Hi mate!,
Love your program it has become my default to go for clustering and consensus.
I have been using it with the error below sporadically poping sometimes, but recently it is happening e…
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Hi,
Thanks for the nice tool. I am using a gbk file generated by prokka tool. But I run into following error:
```
locus2genoplotr -l GMCHABGO_03197 -r renamed_C01871_unicycler.gbk -o single_plot …
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Munch et al. (Syst Bio 2008) assign taxonomies to sequences with the BLAST+tree method, which produces not only a best-guess taxonomic assignment but also a posterior probability for each taxonomic le…
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Author Name: **Bernd empty** (Bernd empty)
Original Redmine Issue: 3030, https://redmine.open-bio.org/issues/3030
Original Date: 2010-03-19
Original Assignee: Bioperl Guts
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Hi,
AlignIO::fas…
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@sacdallago hi, thank you very much for your great data curation. I am planning to use the AAV dataset for my research.
I found that some deletion masks may not have been properly applied to the wi…
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Some notes from my e-mail correspondence with @davidchampredon:
> Here's the outline of the manuscript.
>Introduction
> * Genetic sequences are considered as certain quantities
> * But uncertain…
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Author Name: **Nikolay empty** (Nikolay empty)
Original Redmine Issue: 1528, https://redmine.open-bio.org/issues/1528
Original Date: 2003-09-26
Original Assignee: Bioperl Guts
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Hi I have bee…
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Author Name: **Bernd empty** (Bernd empty)
Original Redmine Issue: 3061, https://redmine.open-bio.org/issues/3061
Original Date: 2010-04-22
Original Assignee: Bioperl Guts
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Hi
Something I s…
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I've found that `SeqIO.write` assumes that attributes like description in seqrecords are filled in and fails if they are `None`. The default constructor for SeqRecord provides dummy values but there i…
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I had this problem when running the embed of bio_embedding,
```
ERROR:bio_embeddings.embed.embedder_interfaces:Error processing batch of 3 sequences: CUDA out of memory. Tried to allocate 972.00 MiB…