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Hello,
I am having some issues with running any filter commands (fasta or fastq). After creating the filtered blobdir however, it always errors out with:
Traceback (most recent call last):
F…
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Will you please assist in getting the viewer in a browser on my local machine? I’ve previously been able to do this with an older BTK conda install, but I’m struggling with the Docker implementation
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```
#inside the viewer directory
npm install
```
npm WARN optional SKIPPING OPTIONAL DEPENDENCY: fsevents@2.1.2 (node_modules/nodemon/node_modules/fsevents):
npm WARN notsup SKIPPING OPTIONAL D…
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Hi,
I just noticed that installations instructions here are no longer working, because git clone does not find the repositories.
https://blobtoolkit.genomehubs.org/install/
btw, is the snakemak…
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Hi all,
I have tried to troubleshoot this on my own to no avail, so I hope I can get your help on this. Blobtools was installed using git and it successfully runs the example data and generates goo…
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Hello
I am for the first time trying to run BTK in Docker and I ran into an issue with the taxdump database.
```
docker run -it -u $UID:$GROUPS \
-v $(pwd):/blobtoolkit/datasets \
…
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Hi there,
I'm trying to view an `insdc-pipeline` produced blobdir, via the blobtoolkit Docker image being run via singularity on a Linux cluster node. The image is pulled and executed as follows:
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Hello!
I installed this recent version of blobtoolkit on our HPC using the conda and pip instructions but when I run this command:
```
blobtools view --view snail --format png --out blobdir_fig…
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Hello,
I am having issues with the blobtool viewer. All steps seem to go fine and I am not having any errors with my blasts or aligning and I can build my blobtools directory with hits and cov, but w…
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Hi,
I'm having trouble getting to run the blobtools sub-pipeline blastn tool (V2.6.5) with a local assembly. It fails at the 3rd step when running rule run_blasn.
```
rule run_blastn:
input: E…