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Let's sharpen this up and flesh it out: (1) We say "examined", but to suit what end? (2) What constitutes a "large event" context? (3) Why is an agent-based model suitable for suiting our end? (It wou…
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When reading in nonmem results from a transit compartment model (8 transit compartments, see end of post for code), i got the following error due to K100 included in code (code was written outside of …
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Let's look for data 💉
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In the following method, the rates for the Gillespie algorithm are computed by multiplying the number of compartments by the probability. Why we are doing that?
Check if this is working for all Ken…
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Using the present code, I could build the covid model and use integration.py to generate infected cases data for one state.
Can I run this model only for a particular city or let's say a university …
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we have some scratch code to estimate the effective reproduction number:
https://github.com/signaturescience/focustools/blob/master/scratch/re-estimation.R
let's roll that into a function in the…
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When excecuting the ` covid19_inference/scripts/interactive/example_paper_scenarios.ipynb` on google colab (kaggle as well) I get the following error:
```
Auto-assigning NUTS sampler...
INFO […
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This issue tracks tasks related to discrete compartmental models.
See [design doc](https://docs.google.com/document/d/1FmU3-8uAhUDyBDyD2Hyr69slJfm9x14tQPFto683VSw/edit?usp=sharing) for motivation.
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Would be great to have more ODE example problems. Currently we only have `logistic`, `lotkavolterra`, `fitzhughnagumo`.
Further, I'd like to also have
* three-body (I will post code below)
* sei…
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This
https://www.mobs-lab.org/uploads/6/7/8/7/6787877/main_arxiv.pdf
says:
"As a service to the community, a database containing the inferred setting-specific matrices aswell as the overall…