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Dear DiaNN Team,
Thank you for developing such an amazing tool.
I have two questions:
1) In version 1.8.x, the report.tsv file included a Fragment.info column (e.g., b6^1/427.23 ...).
Howev…
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Hello,
With the capabilities in the new version, I am interested in using DIA-NN to search for histone PTMs from extracted histones. The since histone tails are highly decorated with PTMs, the main…
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hello!
I'm trying to run dia nn 1.8.1 for 4 samples using the uniprot human reference proteome fasta. The pc I'm using has come to the lab for use with a microarray scanner and even though I downloa…
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Hi Vadim,
I am a little curious in knowing how to derive the phospho site tables from the main DIA-NN report? Which columns and respective filters would I need to apply to derive the table. I real…
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Hello, I encountered an issue as described in the title.
Building Spectral Library using DIA-NN v1.9.1
I created a spectral library using DIA-NN 1.9.1 with the following parameters. The output f…
Mnago updated
3 months ago
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Hello,
My question is in the title. Here are more details:
I generated a spectral library with Fragpipe using unspecific digestion (immunopeptidomics data). I then would like to match this librar…
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Hi,
I am running DIA-NN (1.8.2_beta_8 and 1.9.1) on Linux and have been experiencing the following error (slurm output):
terminate called after throwing an instance of 'CppSQLite3Exception'
Thi…
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Hi,
Thank you for developing DIA-NN! I have used DIA-NN (version 1.8.2) within the FragPipe platform (version 21.1). I have started exploring the main output and noticed that certain columns (Evide…
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Dear DIA-NN,
Thanks for developing such a wonderful software! Your work is highly appreciated!
I have a question:
Would it be possible to customize a modification and insert its delta mass (L…
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Hello :
We employed DIA-NN 1.8.1 to obtain results for the same data on different platforms (Windows / Ubuntu), and all processes were completed without any errors. Nevertheless, we discovered some…