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I get the below error when running on a HPC with 120 cores and 500GB RAM. I read that 137 relates to memory so I increased the allocation to 250G using the -c parameter and a mem.config file, as sugge…
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Is it possible to perform differential expression analysis for each patient and to get the output logFC for each patient
Thanks.
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In the preliminary version of the practical 1, I try to cover following topics:
- [ ] Introduction to Imaging-Based Spatial Transcriptomics (Xenium Platform)
- Overview of Xenium technology and it…
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Hello Mr. Kai Fu
How i can give all 32 bit differential to program and get your result for impossible differential? how i can give special differential and get the result for differential analysis?
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In "Differential Expression Analysis for CCC & Downstream Signalling Networks" part ,
i met following error:
Is CORNETO installation incompatible with LIANA?
########1 i have tried used 2 ways t…
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Hi, nice work on the package!
Later on in my analysis, I need to get the composition of each pseudoreplicate.
I want to do a heatmap of the differentially expressed genes (DEGs) between 2 conditions…
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## Figure files
https://drive.google.com/drive/u/0/folders/1OLHVURBuAcLWaaI23athJjt3008-FHPE
## Panel legends
## Supplementary files
## Methods
## Reproducibility
### Code to gene…
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The total counts of single cells differ significantly, which affects the downstream differential expression analysis. So I was thinking to normalize the data before differential expression analysis. S…
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I used stringtie ballgown pipeline for my data analysis. I am trying to categorize my differentially expressed transcript in novel and known using gffcomapre. During categorization, I found some MSTRG…
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## Hierarchy of RE
```
LTR (Family) —> L1 (Sub-Family) —> L1_Rod (Gene) —> L1_Rod_dup1 (Transcript)
LTR (Family) —> L1 (Sub-Family) —> L1_Rod (Gene) —> L1_Rod_dup2 (Transcript)
LTR (Family) —> L1 …