issues
search
lhqing
/
whole_mouse_brain
misc code for whole mouse brain analysis
MIT License
5
stars
0
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Processed Data
#35
lhqing
opened
1 year ago
0
Figure 4 - Construct gene regulon with multi-omic brain-wide molecular profiles
#32
lhqing
opened
1 year ago
1
designed palette for modality
#31
rachelzeng98
opened
2 years ago
0
How to identify Compartments? How to compare compartment differences between 3C and mC?
#30
lhqing
opened
2 years ago
1
How to identify Domains? How to perform differential analysis on domain boundaries and domain strengths?
#29
lhqing
opened
2 years ago
0
Prepare higlass browser
#28
lhqing
opened
2 years ago
2
DMR by L4Region count, mCG fraction, m-value`wmb.cemba.get_mc_dmr_ds()`
#27
rachelzeng98
closed
2 years ago
0
Figure 2. The DNA methylome contains extensive brain cellular diversity that integrable with other modalities.
#26
lhqing
opened
2 years ago
5
Construct TF-CRE-Gene Regulon by combine all genomic features
#24
lhqing
opened
2 years ago
2
Figure 3. Cell-type-specific chromatin conformation correlates with DNA methylation at multiple scales.
#23
lhqing
opened
2 years ago
2
Figure 1. Establishing whole mouse brain cell and genome atlas with snmC-seq3 and snm3C-seq.
#22
lhqing
opened
2 years ago
5
Figure 5 - Gene regulatory elements classification and mechanistic discussion
#21
lhqing
opened
2 years ago
2
Figure 4 - Spatial related analysis
#20
lhqing
opened
2 years ago
0
Figures
#19
lhqing
opened
2 years ago
0
Merge ALLC error
#18
lhqing
closed
2 years ago
1
Cluster Level Domain and Compartment Analysis
#17
lhqing
opened
2 years ago
1
Call Loop and differential loop via one-way anova
#16
lhqing
opened
2 years ago
2
mC compartment, Genome Partition, Dynamic Cell Cluster Regrouping, Call DMR
#15
lhqing
opened
2 years ago
4
mCT project analysis
#14
lhqing
opened
2 years ago
0
Implement BaseDS
#13
lhqing
closed
2 years ago
0
Add CEMBA RS2 data into wmb
#12
lhqing
opened
2 years ago
1
Merge ATAC fragments and generate base level bigwig files
#11
lhqing
closed
2 years ago
0
update mindnode chart in readme
#10
lhqing
opened
2 years ago
0
merge allc
#9
lhqing
closed
2 years ago
2
merge 3C contacts, raw and imputed
#8
lhqing
closed
2 years ago
2
prepare m3C matrix at cell and cluster level
#7
lhqing
closed
2 years ago
2
prepare L4Region cluster level zarr files
#6
lhqing
closed
2 years ago
1
add new AIBS label to annotation zarr
#5
lhqing
closed
2 years ago
4
Start working on MOFA/MEFISTO
#4
lhqing
closed
1 year ago
0
Finalize the dataset to mC L4 map
#3
lhqing
closed
2 years ago
1
Add L4Region label for each dataset Annotation Zarr
#2
lhqing
closed
2 years ago
2
Finalize Integration And Prepare Cluster Bulk TODO list
#1
lhqing
closed
1 year ago
0