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-searching for reference exome (CDS) as a reference for our exome sequence data due to several reasons:
1- when we aligned to one chromosome like chr 20, the alignment rate was v.v low 2.8%
2- whe…
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One of my layers was named "clothes", inside this folder I had few files starting with name "T-Shirt", the `_dna.split(DNA_DELIMITER)[index]` only parses the "T" within the name hence the function `co…
Xfox1 updated
2 years ago
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On the Orthofinder page for tutorials on the one titled "2. Running an example OrthoFinder analysis," the example files are available for download as a zip file. After downloading the tutorial files a…
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Problem:
Sequences names in FASTA files don't match their names in GTF file.
Log message:
Looking for FASTA references in genome_dir/References found :
- Saccharomyces_cerevisiae.R64-1-1.d…
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Hi David,
Just leaving a minor issue here just in case anyone runs into it in the future. When running
`orthofinder -f primary_transcripts/`
I get the error
`ERROR: external program called by …
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I'm running into an issue at the inventory plugin. At the very first step, Inventory plugin step 4. When I run it I get this :
(devnetvenv) % ansible-inventory -i inventory/dna_center.yml --graph
…
rosia updated
4 years ago
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**Describe the issue**
Pipeline completes create_input_csv_metapipeli... and create_config_json steps but fails at call_metapipeline_DNA after 30 minutes. Log file does not show error message - just …
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Linux version:
Debian GNU/Linux 11 \n \l
---------------------
./gMicroMC
Output:
rm: cannot remove './output/*': No such file or directory
{
//global setting
"Device": 0, // device …
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## Checklist
Please try and tick off each of these items when filing the bug report. There are further instructions on each below.
* [x] Re-run analysis with `run_topostats --core 1`.
* [x] Des…
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Prokka produces an issue in the first LOCUS line of the GBK file when using Spades contig files.
Example :
LOCUS NODE_1_length_148773_cov_5.072501148773 bp DNA linear
Instead there shoul…