SamahElmahdi Glaucoma-variant-calling issues

SamahElmahdi / Glaucoma-variant-calling

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issues

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trying to split vcf file into samples and control

#25 SamahElmahdi opened 4 years ago
1
searching for reference exome

#24 marwaaswa opened 4 years ago
1
Exception in thread "main" htsjdk.samtools.SAMException:

#23 fayrouzAli opened 4 years ago
0
Error: Unable to access jarfile /picard.jar while indexing the sample for GATK

#22 SamahElmahdi opened 4 years ago
0
Error:during sort bam file

#21 marwaabdelazim opened 4 years ago
1
[bam_sort_core] merging from 5 files and 1 in-memory blocks... while sorting the bam file

#20 SamahElmahdi opened 4 years ago
1
trying to find the read group information for each sample

#19 SamahElmahdi opened 4 years ago
3
Error Hisat2 - Aligning

#18 daliamousa opened 4 years ago
1
Hisat2 terminates operation

#17 daliamousa opened 4 years ago
0
indexing .....crashed

#16 fayrouzAli opened 4 years ago
2
jupyterlab issue

#15 marwaabdelazim opened 4 years ago
0
#14 searching for indexed refseq

#14 marwaaswa opened 4 years ago
1
Huge size of whole genome sequence

#13 daliamousa opened 4 years ago
0
Haw to concatinate fastq reference files of chromosomes 3,6,11,20 together in one file

#12 marwaabdelazim opened 4 years ago
4
Encountered internal HISAT2 exception (#1) and reference slected chromosomes (3,6,11,20)

#11 fayrouzAli opened 4 years ago
2
annotated genome

#10 fayrouzAli opened 4 years ago
0
alignment rate=2.8% !!!

#9 SamahElmahdi opened 4 years ago
6
internal HISAT2 exception (#1)

#8 marwaabdelazim opened 4 years ago
0
fastq-dump.2.8.2 err

#7 marwaabdelazim opened 4 years ago
0
Trimming options

#6 marwaaswa opened 4 years ago
0
the ref chromosome and annotation

#5 SamahElmahdi opened 4 years ago
3
Issue during download of 8 million reads for one sample

#4 daliamousa opened 4 years ago
1
Update Marwa Abd elazim

#3 marwaabdelazim closed 4 years ago
0
error during data sub-setting and splitting

#2 SamahElmahdi opened 4 years ago
3
install sratoolkit and spliting 15 million reads

#1 fayrouzAli opened 4 years ago
1