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SamahElmahdi
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Glaucoma-variant-calling
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trying to split vcf file into samples and control
#25
SamahElmahdi
opened
4 years ago
1
searching for reference exome
#24
marwaaswa
opened
4 years ago
1
Exception in thread "main" htsjdk.samtools.SAMException:
#23
fayrouzAli
opened
4 years ago
0
Error: Unable to access jarfile /picard.jar while indexing the sample for GATK
#22
SamahElmahdi
opened
4 years ago
0
Error:during sort bam file
#21
marwaabdelazim
opened
4 years ago
1
[bam_sort_core] merging from 5 files and 1 in-memory blocks... while sorting the bam file
#20
SamahElmahdi
opened
4 years ago
1
trying to find the read group information for each sample
#19
SamahElmahdi
opened
4 years ago
3
Error Hisat2 - Aligning
#18
daliamousa
opened
4 years ago
1
Hisat2 terminates operation
#17
daliamousa
opened
4 years ago
0
indexing .....crashed
#16
fayrouzAli
opened
4 years ago
2
jupyterlab issue
#15
marwaabdelazim
opened
4 years ago
0
#14 searching for indexed refseq
#14
marwaaswa
opened
4 years ago
1
Huge size of whole genome sequence
#13
daliamousa
opened
4 years ago
0
Haw to concatinate fastq reference files of chromosomes 3,6,11,20 together in one file
#12
marwaabdelazim
opened
4 years ago
4
Encountered internal HISAT2 exception (#1) and reference slected chromosomes (3,6,11,20)
#11
fayrouzAli
opened
4 years ago
2
annotated genome
#10
fayrouzAli
opened
4 years ago
0
alignment rate=2.8% !!!
#9
SamahElmahdi
opened
4 years ago
6
internal HISAT2 exception (#1)
#8
marwaabdelazim
opened
4 years ago
0
fastq-dump.2.8.2 err
#7
marwaabdelazim
opened
4 years ago
0
Trimming options
#6
marwaaswa
opened
4 years ago
0
the ref chromosome and annotation
#5
SamahElmahdi
opened
4 years ago
3
Issue during download of 8 million reads for one sample
#4
daliamousa
opened
4 years ago
1
Update Marwa Abd elazim
#3
marwaabdelazim
closed
4 years ago
0
error during data sub-setting and splitting
#2
SamahElmahdi
opened
4 years ago
3
install sratoolkit and spliting 15 million reads
#1
fayrouzAli
opened
4 years ago
1