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Here is a list of obsoletion candidates. I used the following heuristic to guestimate which are "pseudo-generalizations" - i.e. terms cloned from ZFA into TAO and then lifted into phenoscape-ext.
Fir…
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Aim: improve the maintainability of the project catalogue, allowing it to grow without causing an increasing amount of development overhead. Currently, it is populated via a manually run script that c…
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I'm trying to fit a deterministic pomp model to a cohort study data, where individuals were kept track of on a monthly scale.
Plot below shows the number of individuals tested on a monthly scale a…
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##### Please leave your contact information
**Name**
Robert O. Heuckeroth
**Email**
heuckerothr@email.chop.edu
**Can you provide a short description of what you were doing?**
Trying to access my own…
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Thanks very much for developing and maintaining this package. I am finding it very useful for modelling enteric infections and duration of illness.
Is there a way in clm to specify comparisons for …
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wget https://cassava.ucsd.edu/sparc/exports/curation-export.json
Looks like there may be an issue with compiling the organ information in the JSON/TTL output. They are all blank.
grep “\”organ\“:”…
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Review of these terms, notes here on the review and actions, as this involves merging DO records and creating new subtypes.
**neuronal intestinal dysplasia** [DOID:0080072] - make parent term
[…
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(Tripal v3 module)
Hello,
In the biomaterial loader, we can load both flat file and xml files.
In the XML files, we can use BioSample accession, and SRA accession.
In the flat file, we can l…
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It would be useful to include taxonomy information in pan-genome reference to enable analyses such as taxonomy-aware summaries of bowtie2 hits. Taxonomy descriptions are included in the full FASTA def…
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Tricho-hepato-enteric syndrome
caused by mutation in SKIV2L or in TTC37
ref https://ojrd.biomedcentral.com/articles/10.1186/1750-1172-8-5
synonyms
Trichohepatoenteric syndrome
syndromic dia…