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Requesting support for gzipped fastq files.
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Hi,
I was using debar on my fastq file with the input and output (default) as fastq.
Later, I wanted to process the file further with usearch (dereplication) but it says
`---Fatal error---
Bad FA…
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Hey,
Great work!
I noticed that when I use .fastq.gz files I get the error "Illegal modulus zero at /home/unix/vangalen/IronThrone/IronThrone-GoT line 2048."
`IronThrone-GoT --run linear --conf…
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I have paired end fastq file which has 2 adapters
Forward primer: AGATCGGAAGAGCACACGTCTGAACTCCAGTCA
Reverse primer: AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT
Please tell me which lines of Script.py nee…
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Hello,
I am opening an issue as I am trying to install and run ARGprofiler on my laptop for the first time, but i run into an error.
- My machine runs Ubuntu 22.04.4 LTS and I use mamba for instal…
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Hello,
This is similar to [issue#69](https://github.com/chhylp123/hifiasm/issues/69) but for me it is unsolved yet. I am running hifiasm v 0.14.2-r315 to assemble ~3.5Gb genome. My hifi fastq files…
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Inquiry regarding demultiplexing of FAST5/pod5 files using Dorado
Hi there,
I recently conducted direct cDNA sequencing using a barcoded library, which resulted in the generation of FAST5 files (l…
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Following feature would be beneficial in the future:
- The headers of the samplesheet should be able to be validated in `strict` mode, meaning if they are misspelled or missing the pipelines should…
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# Issue Report
Dorado read error correction: calling model for R9.4.1
## Please describe the issue:
Hi, I would like to use the `dorado correct` function to correct R9.4.1 data, but it is unclear…
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Hi, I have a fastq with some empty reads like so:
```
@name
+
@other
AAA
+
999
```
Running `seqtk sample bad.fastq 0.9` on this produces:
```
>name
@other
AAA
+
999
```
which is…