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Roleren
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ORFik
MIT License
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Error in shiftFootprintsByExperiment step
#185
lundlab
opened
4 days ago
17
read.experiment() Error in validateExperiments(df) : File does not exist
#184
SuhasSrinivasan
closed
1 month ago
0
Config use provided path and not BiocFileCache
#183
SuhasSrinivasan
opened
4 months ago
0
Configuration issues persist in 1.24
#182
SuhasSrinivasan
opened
4 months ago
3
Cross-match ORFik ORFs with known ORFs in UniProt
#181
josiegleeson
closed
4 months ago
2
Questions about the manual and results
#180
Arek86
closed
5 months ago
2
Out of Memory error shiftFootPrint function
#179
josefinaperalba
closed
1 month ago
16
Update download.SRA() for greater timeout
#178
SuhasSrinivasan
closed
6 months ago
0
Error with "detectRibosomeShifts()"
#177
JC-therea
closed
6 months ago
5
BiocParallel error when using download.SRA()
#176
SuhasSrinivasan
closed
6 months ago
3
Feature request - map peptides back to ORFs and genomic locations (splice-aware)
#175
josiegleeson
closed
6 months ago
6
Conflicting log statements for STAR.align.folder
#174
SuhasSrinivasan
opened
6 months ago
2
fastp number of threads is set to logical cores / 2
#173
SuhasSrinivasan
closed
6 months ago
1
Feature request: fastp - base correction option
#172
SuhasSrinivasan
opened
6 months ago
0
BiocParallel error during QCreport for maize genome
#171
NastiaSkuba
closed
6 months ago
7
Config issue on Mac
#170
SuhasSrinivasan
closed
7 months ago
6
ORFikQC - DeSeq dataset collapse Error
#169
csittz
closed
7 months ago
4
BiocFileCache path is not easy to use
#168
SuhasSrinivasan
closed
7 months ago
2
Unable to set Custom Configuration
#167
SuhasSrinivasan
closed
7 months ago
6
Doc text adjusted
#166
upgradedavid
closed
7 months ago
2
Ribo-seq Check plot needs more horizontal space
#165
SuhasSrinivasan
closed
7 months ago
3
The makeTxDb*() functions have moved from GenomicFeatures to txdbmaker
#164
hpages
closed
8 months ago
1
STATS.csv has percentage_aligned_raw greater than 100%
#163
SuhasSrinivasan
closed
7 months ago
4
validateExperiments(df): experiment table has non-unique rows!
#162
SuhasSrinivasan
closed
8 months ago
3
SRA Toolkit Binary and OS mismatch
#161
SuhasSrinivasan
closed
8 months ago
1
RiboQC.plot() error
#160
SuhasSrinivasan
closed
8 months ago
3
create.experiment(pairedEndBam = TRUE) error
#159
SuhasSrinivasan
closed
8 months ago
4
create.experiment() warning message
#158
SuhasSrinivasan
closed
8 months ago
1
Error in validateExperiments(df): stage and libtype must be colnames in df!
#157
SuhasSrinivasan
closed
8 months ago
3
Error in shiftFootprintsByExperiment
#156
Arek86
closed
9 months ago
3
ORFikQC error
#155
JGVCruz
closed
9 months ago
12
`computeFeatures` silently removes suffixes from gene names and crashes
#154
m-jahn
closed
9 months ago
4
how to make a useful .txdb for quantification
#153
Shiywa
closed
11 months ago
6
version imcompatible between ORFik and biomartr
#152
Shiywa
closed
11 months ago
6
RAI Score using subset bam file
#151
gpattarone
closed
11 months ago
9
RRS Score using subset bam file
#150
josefinaperalba
closed
11 months ago
35
Makar Issue - Incorrect Assignment of PMID
#149
JackCurragh
closed
1 year ago
2
QC Error
#148
hector3500
closed
1 year ago
8
question about fragment length
#147
ynjin-neo
closed
1 year ago
4
Custom list of potential ORFs
#146
colin986
closed
1 year ago
3
rowMeans used for cds_filter
#145
m-swirski
closed
1 year ago
0
Problem with computeFeatures
#144
JC-therea
closed
1 year ago
2
Wrong antisense ORF
#143
johannesnicolaus
closed
7 months ago
9
Add rich.format for download.SRA.metadata
#142
m-swirski
closed
1 year ago
0
Problem with detectRibosomeShifts in a non-reference species
#141
JC-therea
closed
1 year ago
7
Problem with windowPerReadLength function
#140
JC-therea
closed
1 year ago
5
Feature request for translation start site seq data
#139
m-jahn
closed
1 year ago
6
`computeFeatures` throws error when trying to compute sequence features (bacterial genome)
#138
m-jahn
closed
1 year ago
10
download.SRA.metadata gets only 11 samples (supposedly shuld be 12)
#137
yeroslaviz
closed
1 year ago
3
Update Ribo-seq_pipeline.Rmd
#136
yeroslaviz
closed
1 year ago
0
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