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I've found two different issues.
With title "(How) Are Protein Forcefields Getting Better?" I end up with `slidedeck render` hanging.
With title "Are Protein Forcefields Getting Better?" I end up…
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### Labels
[BUG][runtime][minor]
### Description
The check to see if a forcefield should be spawned somewhere runtimes for tables.
### Steps to reproduce
1. Drag an energy shield genera…
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**Name of effect**
So close, yet so far/Impossible challenge.
**Duration if timed effect (long or short timed?)**
Short
**Effect Description**
Creates a forcefield like normal, but around the…
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https://github.com/mosdef-hub/gmso/blob/5781bf8a4917e83cac541a0c5d9343a4d2cbc1f5/gmso/utils/ff_utils.py#L239
Currently connection types can be referenced from the forcefield using a string of the m…
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Have class-based documentation with hierarchy.
In Sphinx docs.
See example:
https://open-forcefield-toolkit.readthedocs.io/en/0.10.0/topology.html
Source:
https://open-forcefield-toolkit.readt…
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Related to #250 and #246, If we are to serialize a ForceField class or extract ForceField from various other properties. We need two things:
1. For serailization, we need to parse units, group them …
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Figure out how to accept the force field fields from the charmm-gui
Charmm-gui files for opsin 3ug9 are here https://drive.google.com/drive/folders/1Vx2iVaYiJ5TXwPIC27XoHBRujOd97s5U?usp=drive_link
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Hi, I want to build a protein-ligand system where the ligand has more than 150 atoms.
Here is my script:
```
def read protein(protein_file):
protein = pdbfile.PDBFile(protein_file)
retu…
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We recently developed [espaloma](https://github.com/choderalab/espaloma), an experimental graph convolutional model that [can parameterize arbitrary biomolecular systems](https://www.choderalab.org/pu…