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Hi! I was wondering if it is possible to incorporate environmental metadata into an analysis with spieceasi - it seems this would be quite important for getting an accurate network when dealing with d…
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Initial group info you provided:
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| Name | Department/Program | Expertise/Interests |GitHub ID |
| ------------- | ------------- | ------------- | ------------- |
| Samantha Sch…
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Started from discussion on https://github.com/pombase/website/issues/2042
## Summary of what we discussed today
* Cons of current system:
* File naming and organisation might be improved
…
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Dear,
I'm trying to use OMArK to assess the quality of a genome annotation and to be able to compare multiple ones later.
However, whenever I try to run OMArK with the command `omark -f killi_lift…
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Dear Aaron,
I have a question about the scale factor generated via scaleControlFilter. I have used the function"windowCounts" to calculate the bam file of both my IP and my negative control (whole…
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Hi,
I recently annotated a publicly downloaded scRNAseq data-set on seurat and tried to integrate it to perform DWLS but I got this error code:
Error in dwls_results[ct, cluster_i_cell]
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After talking with Judy Blake at ISMB, I think we have an agreement in principle that we should get more MGI data into Wikidata. Next step is to actually prototype a few of their records as Wikidata …
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Hi,
While trying importing the `compound_origins.tsv` flat file with `R`, I get the following error:
```{r}
Warning: 25 parsing failures.
row col expected …
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Is this a taxonomy? How should we model these. Need to do a review.
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**Methods:**
The individual transcriptomes of the P. australis species were placed into three tissue categories with three replicate transcriptomes. The three tissue categories were as follows: eye…