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Adding ska to our phylogenetics inference offerings would provide an alternative reference-free phylogenetics analysis tool in addition to kSNP3. It could also be used for creating whole genome alignm…
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Hi!
Thank you for sharing this extraordinary pipeline. Tried with some samples and the outcomes were amazingly satisfactory.
As we are planning to switch to analysis based on the new version of …
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**Describe the bug**
I installed antiSMASH 7.1.0 to my local PC, recently. Using the same file, I did the antiSMASH analysis in both the local PC and web server and wanted to check if it worked prope…
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Hi TAs, I encountered a problem when running the **gatk Funcotator** in the annotation step.
The command line I use is:
```bash
gatk Funcotator --data-sources-path /lustre1/share/references/funco…
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I am using star first time, and tryng to run STAR for denovo analysis but every time its killed after some time i thought it may be due to memory but i have 500 GB space in my system , can some one su…
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Hello
I am teaching myself how to run panX using TestSet. Here is the command I run exactly following the instructions.
./panX.py -fn data/TestSet/ -sl TestSet -t 32 > TestSet.log 2> TestSet.err
…
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### Ask away!
Hello,
I am trying to get the demo model to work using the following script on HPC and I get a couple of error Plus 4 more processes waiting for tasks…
Doing reference based transcr…
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Hi! Thanks so much for this package.
I am working some rna-seq in the maine species without genome
Your guide presents all downstream analysis example and R scripts with genome index, so how to …
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want to be able to align sea star coelomocyte RNA seq data to the pycno genome.
The files provided that I have access to are of transcripts. Wiki page of the key files I have [here](https://github…
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Hello, I am trying to analyze RRBS data from M. californianus and there is a published scaffold genome that I used in Bismark to get bam and bed files. I want to visualize these against the genome so …