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Hi, I want to know how can I run multiple genomes using FASTA format, because I use this command but doesn´t work.
amrfinder --plus --nucleotide *.fasta -O Streptococcus_pneumoniae > results.csv
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Hi
1) I am having trouble with getting PGAP running.
Firstly, I did the installation of docker desktop.
https://docs.docker.com/desktop/install/ubuntu/
Docker is located in the following di…
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## 어떤 내용의 논문인가요? 👋
대형 딥 뉴럴 네트워크 모델을 효율적으로 모델 병렬화 하는 방법에 관한 연구
## Abstract (요약) 🕵🏻♂️
Scaling up deep neural network capacity has been known as an effective approach to improving model quality…
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I've noticed in Grinding Stats I have map names with missing letters and wrong colors. Looking through the code, it is using the ColoredString method (https://openplanet.dev/docs/api/global/ColoredStr…
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Add support for having a model with layers split across several GPUs.
Make sure the layers (and its HookPoints) know what device they're on, so that hooks can ensure that they aren't needlessly mov…
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Hello,
I had a problem using PGAP to analyze my own data.
test genome worked, but not my data.
I've attached the yaml files (changed file name extension to txt for uploading here) I used and lo…
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Error log: /mnt/tet/OpenChatKit-main/training
--model-name /mnt/tet/OpenChatKit-main/training/../pretrained/Pythia-6.9B-deduped/EleutherAI_pythia-6.9b-deduped/ --tokenizer-name /mnt/tet/OpenChatKit-…
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**Problem**
After running the installation as described in Quick Start, running the pipeline on the MG37 test genome produces "PGAP failed, docker exited with rc = 1". Running the test genome with "-…
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Hello,
I've been having some problems with a few runs of our single cell RNAseq data.
We get a high percentage of unmapped reads.
I've checked a couple of potential issues but it doesn't seem to …