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## Description
The code which implements the overlap check in ALJ may give false positives and false negatives. When scripts are run using a debug build, this can cause unwanted failures in an asse…
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## Description
Data of the random force term in the Langevin integrator can not be dumped into the output file in the current version. It can be one of the properties of the simulation objects that c…
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## Description
We currently vendor https://github.com/NVIDIA/jitify in `hoomd/jit`. Looking at the diffs, it seems we could likely just have `jitify` be a dependency for GPU JIT features in hoomd-blu…
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## Description
The `hoomd.md.pair.Pair` base class seems to take care of a lot of administrative details (none of which I am familiar with) that seem to be necessary for using a neighborlist in a p…
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## Description
I am looking to implement protracted colored noise dynamics (PCND) as a publishable contribution in HOOMD-blue. PCND is a method that adds stochastic noise in order to increase …
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## Description
## Script
Came across this while working but it also fails without anything in the snapshot.
```python
import hoomd
import gsd.hoomd
device = hoomd.device.auto_select(…
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## Description
In undocumented behavior, `md.constrain.Rigid` uses `charges` and `diameters` only in `create_bodies`. This is unlike `constituent_types`, which is used checked the body validation…
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I am using the `create_hoomd_forcefield()` function to generate an initial configuration and set the force field parameters for a HOOMD-blue simulation using HOOMD-blue version 3. The simulation is a …
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I believe there's a backend issue with either the extension module or the python interpreter. When I run any example in hoomd-blue, I get an error: Segmentation fault (core dumped)
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## Description
These MPI-related files are installed:
```
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/HOOMDMPI.h
%%PYTHON_SITELIBDIR%%/hoomd/include/hoomd/MPIConfiguration.h
%%PYTHON_SITELIBDIR%%/h…