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I try to run hicanu ( `canu v2.3 `) for human hifi data on a slurm cluster and I cannot solve these errors.
Here is the command I used in my Slurm script
```
#!/bin/bash
#SBATCH --job-name=can…
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Hello,
I want to assemble a genome with Oxford Nanopore reads and everything works fine until bogart. Can someone help me? Restarting canu results in the same error.
Canu is running on a virtual…
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Are there any plans to add a simple bloom filter in addition to the interleaved one? This would be very useful for many applications, and simply using the interleaved bloom filter with a single bin …
tloka updated
3 years ago
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Hi there,
I have been trying to run Canu 2.1.1 on some nanopore long reads using the script:
```
load_canu
canu gridOptions="-p safs" minThreads=48 -d /safs-data01/uqkweigh/long-read-assemblie…
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Hi,
I'm having problems with canu not finding any overlaps during the mhap step. The dataset is nanopore reads basecalled using Guppy and the SUP model, adaptor-trimmed using porechop and filtered …
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I.e. any switch that tracks which k-mer sequence is present in the signature?
Thank you.
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Hi, I am running Canu 2.1 and bumped into Kmer counting errors.
Would you let me know if this is memory error or the other kinds? and how to solve it?
(I assigned 30 cores, and 900G memory)
**T…
ghost updated
2 years ago
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Hello,
I am running canu 2.1.1 on a 2.7 Gb highly heterozygous plant genome, starting from ONT reads (N50 about 50 kb, 75x coverage, or 37x per allele). The command used is
`canu -d Sikem_ONT_EC …
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Dear all,
I am having an error of disk quota exceeded during the assembly run. These are ~100GB ONT data, and the genome is expected to be of 2.5GB. I wonder if the error is purely about disk quota…
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hi @skoren, Thanks for your work about genome assembling and overlapping (MHAP) because after reading that, i interested in this field of bioinformatics. and i want to work on this field in my thesis.…