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Let me first thank you by your program: CONGRATULATIONS!!!.
IT BEATIFULLY WORKED !!
I was looking for years for something similar !!!
I am a user of PyRx for many years. Mostly we used to confi…
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Currently, no additional annotation is stored in the database.
- [ ] Which annotations do we want
- [ ] Where do we get the annotations from
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I got this error massage when I used the python vina==1.2.3:
```
ERROR: The ligand is outside the grid box. Increase the size of the grid box or center it accordingly around the ligand.
```
How …
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This is a list of suggested new categories to add to the database. If you have any other suggestions please comment below. Keep in mind that it is a significant amount of work to recategorise the tool…
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I am running scanpy anndata through CellChat and my code works except for when it gets to computing the communication probability. This is the error I get. ad ad_object # access normalized data matr…
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Hi,
Thanks for developing this awesome package. I'd like to study ligand and receptor pairs in experimental and control groups. When I visualize upregulated signaling ligand-receptor pairs using a bu…
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Hi,
I have a cellchat object generated from public data GSE136831.
I ran
>cellchat_gse136831_ipf_trimean ipf_sig str(ipf_sig)
'data.frame': 616 obs. of 2 variables:
$ ligand : chr "PSAP…
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Dear All,
When I perform a single point energy evaluation with Vina and AD4 force field (on a pose generated with ADFR), I am never able to obtain a perfect match with the energy terms for the end …
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Hi there,
I checked the Dropbox location where you have more complete data available. Could you please let me know what kind of data are in the nonVascular.adDEGs.pseudobulk folder? They looked lik…
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Hello, many thanks for all your efforts in developing CellphoneDB!
I was hoping you could help me understand the situation below. From your publication (Efremova et al., 2020), it states that an in…