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I am trying to run philosopher pipeline with version 5.0, but I keep getting an error. The data consist of 12 samples and 48 fractions for each sample (label free). I get this error when I try to lau…
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Not really an issue, but I noticed you are using my uniplot library and added a comment that something was not working as you expected.
https://github.com/BorgwardtLab/maldi_amr/blob/8ce815ef43b073…
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# Feature request
Hi Nicolas,
We are implementing the eln in our core unit. It's great, thanks for developing and mantaining this!
Due we need quality and activity indicators we need to register …
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Thank you for providing with MALDIquant. I have peptide MALDI-TOF MS data collected in reflectron mode. My data are in .mzML format. I am unable to plot or process the data using MALDIquant. I am usin…
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cI have the following two questions that I would like to ask you.
1. Regarding the imzML format data downloaded from public datasets, can I use your method?
2. Can I process the .d file output from …
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**Describe the bug**
I'm trying to run the philosopher TMT analysis pipeline on a 11plex LC-MS/MS data with the following setting in the philosopher.yml file.
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On https://portal-prod.stage.hubmapconsortium.org/organ/kidney#search, in the horizontal bar chart, these links don't return any results:
- `MALDI IMS [Image Pyramid]`
- https://portal-prod.stag…
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nanoDESI is now part of IMS. That means the assay team will locally validate a submission with assay_type nanoDESI and will be validated against the metadatada/dir structure schema files `ims.yaml`.
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As the title says: LabCAS RDF should have public data only. Currently it has everything.
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Supersedes #128
In MSiReader, Måns demonstrated an image overlay tool where you can select a number of different ion images to show simultaneously, assign each one a color, scale them, etc.
And…