-
I would like up to 3 overlords scouting at a time.
They do not need the 'map' anymore.
-
Hello,
Thank you very much for the great work! On both sides the algorithmic (runtime, variance, number of ids) and the software management (open source, CC license, issues on github) you put acade…
-
**Current Behavior**
I have run `nextstrain build ncov/` with no problems for a few iterations of the GISAID data. Today using the most up to date sequences, the code is failing with the followin…
-
Hi Vadim,
First of all, congrats for creating this software, it really works very well! I have two questions for you (I am using version 1.7.6). I would like to create full reports (no 0s or NaNs) …
-
I get the following error when trying to run the package, it seems that the version of tensorflow used in the package is an older version:
File "modules\karoo_gp_base_class.py", line 59, in
'…
-
Dear Klaus, I've tried to perform a maximum parsimony analysis using phangorn package, but have obtained such a warning: Error in optim.fitch(tree = tree, data = data, trace = trace, rearrangements =…
-
Hi,
This is more a query than an issue. After running
1) MTBseq --step TBfull
2) MTBseq --step TBjoin .......
I use the .....amended_u95_phylo_w12.plainIDs.fasta file to generate a newick f…
-
It recently came up in #155 and #146 that @lauranoges et al would be okay sticking with just a single tree building program, as long as the x-axis was "interpretable" for them. Erick pointed out that …
-
Make the tree reader fail. Similar to #80. Example:
```
#NEXUS
Begin trees; [Treefile saved Thu Feb 21 14:21:24 2019]
[!
>Consensus of 19848 trees
>
>Source of trees from which consensus(es…
-
David and I just created trees based on Duncan's analysis of the sequences I gained recently. It would be really great if there was a way to reconstruct the sequences at internal nodes of the trees. …