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### Please agree to the following
- [X] I have searched [existing issues](https://github.com/cryptomator/cryptomator/issues?q=) for duplicates
- [x] I agree to follow this project's [Code of Condu…
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Add `sink()` for debugging Galaxy output
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Hi, I am importing my GSM models that were made using gapseq into m2m. I am confused by how to create the seed file. In your tutorial, it is said:
`Once a list of metabolites has been designed, the…
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Hi,
Thanks for this pipeline. I am at the same time looking at m2m. I wonder how to generate a "seed" file in .xml especially if I have no idea about the medium that would be used for the communit…
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On reading sbmlfiles from generated kegg-kgml-files in sbml the follwing warning appears:
WARN (AbstractReaderWriter.java:105) - processAttribute: The attribute 'id' on the element transition is no…
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With certain .gbff files, I get the following error during the recon step: Fatal error: XML not well-formed - encountered token at illegal syntax position: 'START-TAG' following: '(:COMMENT "[if gt IE…
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Dear sir/madame
Recently, I came across your paper describing the COSMOS method and I would like to try to use this method for my own data. Being trained as a biomedical scientist and not a bioinf…
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Hi, I am new to metage2metabo. It looks like a great tool.
I have a general question. Can the metabolic objective be modified to subset on only certain classes of metabolites, for example, vitamins…
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Thanks to #432 we have now access to info on the topic of various articles and journals using MeSH.
The goals of this Issue are:
- [x] Inspect the MeSH topics and identify the best candidates fo…
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"There are three orthogonal and complementary visual languages defined in SBGN: Process Description (PD), Entity Relationship (ER), and Activity Flow (AF). They can be seen as three alternative projec…